Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g01020 | ATGACGCTTTCGGAGCAGAATCCGGCGGAGTTTCGCAAAGGTTTGGAAGGTGAGGGTCTGTTTGAGGAGCTATGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTTTCAATGGAGAAAGGGTTTTTTACTTTCCTCAAGGGCATATGGAACAACTGGAAGAGTCAACAAATCATGAACTCAATCACCAAATCCCTCATTTTGATCTTCCTTCTAAGATCCTCTGTCGTGTCGTGAACATTCGTTTGTTGGCTGAAAAGGAAACGGATGAGGTCTATGCTCAAATCACTTTACAACCAGAAGCTGATCAAAGTGAGCCGCAATGCCCTGATCCAGAGCCGCCTGAGCGGACAAGGCCAACTGTTCATTCTTTTTGTAAGATTTTGACAGCTTCTGATACTAGCACTCATGGAGGTTTCTCTGTTCTTAAAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAGTCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGACATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGAAGGCATTTGCTAACGACAGGGTGGAGTACGTTTGTCGTATCGAAACGACTCGTTGCTGGGGATGCCTTTGTGTTCTTAAGGGGTGACAATGGGGAACTAAGAGTCGGGGTACGACGACAGGCTCGACAGCAGAGTTTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTGTTCGTACGCAGACGTTTTTCGTTGTGTATTACAAGCCGAGAACTAGCCAATTCATCATCGGCTTAAACAAATACTTGGAAACGATCAAGAACAGATATGAAGTCGGGATGCGGTTTAAGATGAGATTCGAAGGAGAGGAATCACCGGAGAGAAGGTTCACTGGTACTATTGTTGGTGTTGGAGACATATCACCAATTTGGTCTGATTCTAAATGGCGATCACTGAAGATCCAATGGGATGAAGCTGCTGCAATCCAGAGGCCCGAGCGAGTTTCTCCGTGGGAAATCGAACCGTTTGTACCGTCTGCGTCCTTAAACTTCACTCATCCATCCATAAAGAGTAAGAGGGCTCGACCCGTCGAGGTTCCTCCTCCTGAAAACACTTCTAGCTCGACTCCTACGGGTTTTTGGCTTCACGGATCGACGATTCCTCACGAGATACCCCAACTAAGTGGTGCTAATGATGTTCCGAGCAGCGGTAACCAGGTTGTTTGGTCTCTCTGGCAGCAAACGCTCGATGTCAATGTCGATAGCAGTCGAAGCCACTGCAATCCAATGGCACATGTTGAAGGCATTTGGCCTTCTCCTCCTCCTCCACTCTGTAATAACTCCCTGAAGCCTCTTCCCTCCCCTTATTCTCCATCCAGTACTTCAAAGCCTAGCAGTGAGCTCATTGAGCACGATCAATCGGAGAAAGGGAATAAACCCGACATCTCTCTCGGCTGCCGAATATTCGGGATCGATTTGAAAAAGAACTCTAGCATTGTCCCTTCCTTGGAGAAGAAATCGTGTTGCCAAACTACGGTGGCCACCGACATTGCCAAGGATCCAGTACCGATAGCTGCTGTGACATCTCAAGCCGATGCAGGAAAGGAGCAGCAGCAAGTTGCATCAGAGCTGTCGATGAAAGGAACACAGACGAATCACATTCCGAATTCATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTCGGTCGAGCAGTTGACTTAACGACACTGAAAGGGTACGAAGATCTCATAGACGAACTCGAGAACGTGTTCGAAATAAAAGGAGAACTTCGCGAAATGAACAAGTGGTCTATCGTTTTCACCGACGATGAATACGACATGATGCTCGTGGGGGATGATCCATGGCCAGAATTCTGCCAGATGGTGAAGAGGATCTTTATATACTCGAGCGAAGAAGTTAAGACGATGAGTAGCAACAGCAAGCTCGTTTCGCCACCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACAGAATCCTAA | 2043 | 47.28 | MTLSEQNPAEFRKGLEGEGLFEELWKACAGPLVEVPFNGERVFYFPQGHMEQLEESTNHELNHQIPHFDLPSKILCRVVNIRLLAEKETDEVYAQITLQPEADQSEPQCPDPEPPERTRPTVHSFCKILTASDTSTHGGFSVLKKHATECLPPLDMSQSTPTQELAAKDLHGHEWKFKHIFRGQPRRHLLTTGWSTFVVSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIIGLNKYLETIKNRYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPIWSDSKWRSLKIQWDEAAAIQRPERVSPWEIEPFVPSASLNFTHPSIKSKRARPVEVPPPENTSSSTPTGFWLHGSTIPHEIPQLSGANDVPSSGNQVVWSLWQQTLDVNVDSSRSHCNPMAHVEGIWPSPPPPLCNNSLKPLPSPYSPSSTSKPSSELIEHDQSEKGNKPDISLGCRIFGIDLKKNSSIVPSLEKKSCCQTTVATDIAKDPVPIAAVTSQADAGKEQQQVASELSMKGTQTNHIPNSSSRTRTKVQMQGVAVGRAVDLTTLKGYEDLIDELENVFEIKGELREMNKWSIVFTDDEYDMMLVGDDPWPEFCQMVKRIFIYSSEEVKTMSSNSKLVSPPSLDSLDSERKTES | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7722341 | 7726267 | + | Cp4.1LG17g10130.1 | Cpe17g01020 | 484338 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g01020 | 680 | PANTHER | AUXIN RESPONSE FACTOR 11 | 8 | 668 | - | - | |
Cpe17g01020 | 680 | MobiDBLite | consensus disorder prediction | 98 | 120 | - | - | |
Cpe17g01020 | 680 | SUPERFAMILY | CAD & PB1 domains | 566 | 646 | - | - | |
Cpe17g01020 | 680 | MobiDBLite | consensus disorder prediction | 460 | 477 | - | - | |
Cpe17g01020 | 680 | MobiDBLite | consensus disorder prediction | 458 | 491 | - | - | |
Cpe17g01020 | 680 | Pfam | AUX/IAA family | 558 | 655 | IPR033389 | - | |
Cpe17g01020 | 680 | Gene3D | - | 286 | 358 | - | - | |
Cpe17g01020 | 680 | Gene3D | - | 122 | 227 | IPR015300 | - | |
Cpe17g01020 | 680 | ProSiteProfiles | B3 DNA-binding domain profile. | 125 | 227 | IPR003340 | GO:0003677 | |
Cpe17g01020 | 680 | MobiDBLite | consensus disorder prediction | 554 | 574 | - | - | |
Cpe17g01020 | 680 | CDD | B3_DNA | 123 | 225 | IPR003340 | GO:0003677 | |
Cpe17g01020 | 680 | SUPERFAMILY | DNA-binding pseudobarrel domain | 116 | 254 | IPR015300 | - | |
Cpe17g01020 | 680 | Pfam | B3 DNA binding domain | 125 | 226 | IPR003340 | GO:0003677 | |
Cpe17g01020 | 680 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 8 | 668 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cpe17g01020 | 680 | SMART | B3_2 | 125 | 227 | IPR003340 | GO:0003677 | |
Cpe17g01020 | 680 | MobiDBLite | consensus disorder prediction | 369 | 388 | - | - | |
Cpe17g01020 | 680 | MobiDBLite | consensus disorder prediction | 657 | 680 | - | - | |
Cpe17g01020 | 680 | Gene3D | - | 566 | 658 | - | - | |
Cpe17g01020 | 680 | Pfam | Auxin response factor | 251 | 330 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cpe17g01020 | 680 | ProSiteProfiles | PB1 domain profile. | 570 | 651 | IPR000270 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe13g00097 | Cpe-Chr13:707914 | Cpe17g01020 | Cpe-Chr17:7722341 | 0 | dispersed | |
Cpe14g00449 | Cpe-Chr14:2820937 | Cpe17g01020 | Cpe-Chr17:7722341 | 0 | dispersed | |
Cpe17g01020 | Cpe-Chr17:7722341 | Cpe18g00939 | Cpe-Chr18:8268551 | 1.31E-30 | dispersed | |
Cpe17g01020 | Cpe-Chr17:7722341 | Cpe01g00608 | Cpe-Chr1:3504405 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50844 | PF02309 | AUX_IAA | 2.00E-10 | CL0072 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g01020 | K14486 | - | csv:101205805 | 1068.14 |