Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01020 ATGACGCTTTCGGAGCAGAATCCGGCGGAGTTTCGCAAAGGTTTGGAAGGTGAGGGTCTGTTTGAGGAGCTATGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTTTCAATGGAGAAAGGGTTTTTTACTTTCCTCAAGGGCATATGGAACAACTGGAAGAGTCAACAAATCATGAACTCAATCACCAAATCCCTCATTTTGATCTTCCTTCTAAGATCCTCTGTCGTGTCGTGAACATTCGTTTGTTGGCTGAAAAGGAAACGGATGAGGTCTATGCTCAAATCACTTTACAACCAGAAGCTGATCAAAGTGAGCCGCAATGCCCTGATCCAGAGCCGCCTGAGCGGACAAGGCCAACTGTTCATTCTTTTTGTAAGATTTTGACAGCTTCTGATACTAGCACTCATGGAGGTTTCTCTGTTCTTAAAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAGTCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGACATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGAAGGCATTTGCTAACGACAGGGTGGAGTACGTTTGTCGTATCGAAACGACTCGTTGCTGGGGATGCCTTTGTGTTCTTAAGGGGTGACAATGGGGAACTAAGAGTCGGGGTACGACGACAGGCTCGACAGCAGAGTTTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTGTTCGTACGCAGACGTTTTTCGTTGTGTATTACAAGCCGAGAACTAGCCAATTCATCATCGGCTTAAACAAATACTTGGAAACGATCAAGAACAGATATGAAGTCGGGATGCGGTTTAAGATGAGATTCGAAGGAGAGGAATCACCGGAGAGAAGGTTCACTGGTACTATTGTTGGTGTTGGAGACATATCACCAATTTGGTCTGATTCTAAATGGCGATCACTGAAGATCCAATGGGATGAAGCTGCTGCAATCCAGAGGCCCGAGCGAGTTTCTCCGTGGGAAATCGAACCGTTTGTACCGTCTGCGTCCTTAAACTTCACTCATCCATCCATAAAGAGTAAGAGGGCTCGACCCGTCGAGGTTCCTCCTCCTGAAAACACTTCTAGCTCGACTCCTACGGGTTTTTGGCTTCACGGATCGACGATTCCTCACGAGATACCCCAACTAAGTGGTGCTAATGATGTTCCGAGCAGCGGTAACCAGGTTGTTTGGTCTCTCTGGCAGCAAACGCTCGATGTCAATGTCGATAGCAGTCGAAGCCACTGCAATCCAATGGCACATGTTGAAGGCATTTGGCCTTCTCCTCCTCCTCCACTCTGTAATAACTCCCTGAAGCCTCTTCCCTCCCCTTATTCTCCATCCAGTACTTCAAAGCCTAGCAGTGAGCTCATTGAGCACGATCAATCGGAGAAAGGGAATAAACCCGACATCTCTCTCGGCTGCCGAATATTCGGGATCGATTTGAAAAAGAACTCTAGCATTGTCCCTTCCTTGGAGAAGAAATCGTGTTGCCAAACTACGGTGGCCACCGACATTGCCAAGGATCCAGTACCGATAGCTGCTGTGACATCTCAAGCCGATGCAGGAAAGGAGCAGCAGCAAGTTGCATCAGAGCTGTCGATGAAAGGAACACAGACGAATCACATTCCGAATTCATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTCGGTCGAGCAGTTGACTTAACGACACTGAAAGGGTACGAAGATCTCATAGACGAACTCGAGAACGTGTTCGAAATAAAAGGAGAACTTCGCGAAATGAACAAGTGGTCTATCGTTTTCACCGACGATGAATACGACATGATGCTCGTGGGGGATGATCCATGGCCAGAATTCTGCCAGATGGTGAAGAGGATCTTTATATACTCGAGCGAAGAAGTTAAGACGATGAGTAGCAACAGCAAGCTCGTTTCGCCACCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACAGAATCCTAA 2043 47.28 MTLSEQNPAEFRKGLEGEGLFEELWKACAGPLVEVPFNGERVFYFPQGHMEQLEESTNHELNHQIPHFDLPSKILCRVVNIRLLAEKETDEVYAQITLQPEADQSEPQCPDPEPPERTRPTVHSFCKILTASDTSTHGGFSVLKKHATECLPPLDMSQSTPTQELAAKDLHGHEWKFKHIFRGQPRRHLLTTGWSTFVVSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIIGLNKYLETIKNRYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPIWSDSKWRSLKIQWDEAAAIQRPERVSPWEIEPFVPSASLNFTHPSIKSKRARPVEVPPPENTSSSTPTGFWLHGSTIPHEIPQLSGANDVPSSGNQVVWSLWQQTLDVNVDSSRSHCNPMAHVEGIWPSPPPPLCNNSLKPLPSPYSPSSTSKPSSELIEHDQSEKGNKPDISLGCRIFGIDLKKNSSIVPSLEKKSCCQTTVATDIAKDPVPIAAVTSQADAGKEQQQVASELSMKGTQTNHIPNSSSRTRTKVQMQGVAVGRAVDLTTLKGYEDLIDELENVFEIKGELREMNKWSIVFTDDEYDMMLVGDDPWPEFCQMVKRIFIYSSEEVKTMSSNSKLVSPPSLDSLDSERKTES 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7722341 7726267 + Cp4.1LG17g10130.1 Cpe17g01020 484338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01020 680 PANTHER AUXIN RESPONSE FACTOR 11 8 668 - -
Cpe17g01020 680 MobiDBLite consensus disorder prediction 98 120 - -
Cpe17g01020 680 SUPERFAMILY CAD & PB1 domains 566 646 - -
Cpe17g01020 680 MobiDBLite consensus disorder prediction 460 477 - -
Cpe17g01020 680 MobiDBLite consensus disorder prediction 458 491 - -
Cpe17g01020 680 Pfam AUX/IAA family 558 655 IPR033389 -
Cpe17g01020 680 Gene3D - 286 358 - -
Cpe17g01020 680 Gene3D - 122 227 IPR015300 -
Cpe17g01020 680 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Cpe17g01020 680 MobiDBLite consensus disorder prediction 554 574 - -
Cpe17g01020 680 CDD B3_DNA 123 225 IPR003340 GO:0003677
Cpe17g01020 680 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Cpe17g01020 680 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Cpe17g01020 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 668 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe17g01020 680 SMART B3_2 125 227 IPR003340 GO:0003677
Cpe17g01020 680 MobiDBLite consensus disorder prediction 369 388 - -
Cpe17g01020 680 MobiDBLite consensus disorder prediction 657 680 - -
Cpe17g01020 680 Gene3D - 566 658 - -
Cpe17g01020 680 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe17g01020 680 ProSiteProfiles PB1 domain profile. 570 651 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00097 Cpe-Chr13:707914 Cpe17g01020 Cpe-Chr17:7722341 0 dispersed
Cpe14g00449 Cpe-Chr14:2820937 Cpe17g01020 Cpe-Chr17:7722341 0 dispersed
Cpe17g01020 Cpe-Chr17:7722341 Cpe18g00939 Cpe-Chr18:8268551 1.31E-30 dispersed
Cpe17g01020 Cpe-Chr17:7722341 Cpe01g00608 Cpe-Chr1:3504405 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50844 PF02309 AUX_IAA 2.00E-10 CL0072 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01020 K14486 - csv:101205805 1068.14