Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe17g01068 | ATGTATTTGAGACTCAGGGGCATTGGTCATATGGGGGAAGGATCAATGGATGACATGGAAGGAACTAGAGTTACTTTGATCGAGTCGTCGTCATCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCATGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAATGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTGCTAGCAATGATTTGAGCTCATCTTGGGTCGGAACGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACGATGCTGACAGAAGAAAAAGTATGTTTCCAGGGTTGTCGGGCTGTGATTACAAAGAAAAACAGCCACCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGATGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTCATCCATAACGATGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGCCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA | 921 | 47.12 | MYLRLRGIGHMGEGSMDDMEGTRVTLIESSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATIMLNAGRFLYSNQGPRFLPFGNQLLSASNDLSSSWVGTIKPEHNDALCSSNSQLDDADRRKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVMGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFIHNDGLGFESDLVSPRLASDGSSDANIRCYSMFEDGPDGSSIDLFRF | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 8083301 | 8086452 | + | Cp4.1LG17g10620.1 | Cpe17g01068 | 484386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe17g01068 | 306 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED | 28 | 252 | - | - | |
| Cpe17g01068 | 306 | SUPERFAMILY | SBT domain | 50 | 131 | IPR036893 | GO:0003677|GO:0005634 | |
| Cpe17g01068 | 306 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 28 | 252 | IPR044817 | GO:0003677 | |
| Cpe17g01068 | 306 | Pfam | SBP domain | 52 | 125 | IPR004333 | GO:0003677 | |
| Cpe17g01068 | 306 | ProSiteProfiles | Zinc finger SBP-type profile. | 49 | 126 | IPR004333 | GO:0003677 | |
| Cpe17g01068 | 306 | Gene3D | - | 44 | 113 | IPR036893 | GO:0003677|GO:0005634 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00630 | Cpe-Chr3:3756159 | Cpe17g01068 | Cpe-Chr17:8083301 | 2.59E-47 | dispersed | |
| Cpe04g00482 | Cpe-Chr4:5477767 | Cpe17g01068 | Cpe-Chr17:8083301 | 4.96E-51 | dispersed | |
| Cpe09g00953 | Cpe-Chr9:8542517 | Cpe17g01068 | Cpe-Chr17:8083301 | 3.29E-48 | dispersed | |
| Cpe17g01068 | Cpe-Chr17:8083301 | Cpe18g00914 | Cpe-Chr18:8150876 | 4.78E-47 | dispersed | |
| Cpe01g00972 | Cpe-Chr1:5787938 | Cpe17g01068 | Cpe-Chr17:8083301 | 3.73E-167 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50850 | PF03110 | SBP | 1.40E-28 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe17g01068 | - | - | csv:101217032 | 483.411 |