Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01068 ATGTATTTGAGACTCAGGGGCATTGGTCATATGGGGGAAGGATCAATGGATGACATGGAAGGAACTAGAGTTACTTTGATCGAGTCGTCGTCATCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCATGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAATGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTGCTAGCAATGATTTGAGCTCATCTTGGGTCGGAACGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACGATGCTGACAGAAGAAAAAGTATGTTTCCAGGGTTGTCGGGCTGTGATTACAAAGAAAAACAGCCACCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGATGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTCATCCATAACGATGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGCCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA 921 47.12 MYLRLRGIGHMGEGSMDDMEGTRVTLIESSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATIMLNAGRFLYSNQGPRFLPFGNQLLSASNDLSSSWVGTIKPEHNDALCSSNSQLDDADRRKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVMGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFIHNDGLGFESDLVSPRLASDGSSDANIRCYSMFEDGPDGSSIDLFRF 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 8083301 8086452 + Cp4.1LG17g10620.1 Cpe17g01068 484386
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01068 306 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 28 252 - -
Cpe17g01068 306 SUPERFAMILY SBT domain 50 131 IPR036893 GO:0003677|GO:0005634
Cpe17g01068 306 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 252 IPR044817 GO:0003677
Cpe17g01068 306 Pfam SBP domain 52 125 IPR004333 GO:0003677
Cpe17g01068 306 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Cpe17g01068 306 Gene3D - 44 113 IPR036893 GO:0003677|GO:0005634
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00630 Cpe-Chr3:3756159 Cpe17g01068 Cpe-Chr17:8083301 2.59E-47 dispersed
Cpe04g00482 Cpe-Chr4:5477767 Cpe17g01068 Cpe-Chr17:8083301 4.96E-51 dispersed
Cpe09g00953 Cpe-Chr9:8542517 Cpe17g01068 Cpe-Chr17:8083301 3.29E-48 dispersed
Cpe17g01068 Cpe-Chr17:8083301 Cpe18g00914 Cpe-Chr18:8150876 4.78E-47 dispersed
Cpe01g00972 Cpe-Chr1:5787938 Cpe17g01068 Cpe-Chr17:8083301 3.73E-167 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50850 PF03110 SBP 1.40E-28 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01068 - - csv:101217032 483.411