Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01070 ATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCGAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCGCCAGAGCCAAATGTATCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTTAAGCAGATCAGATCAACAAGGACTCAGTACATGCTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAACGAAGCAAACAAGACACTGAAACAAAGGTTGATTGAAGGGTATCAAGTAAATGCCCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCTCCTAGCGATGCCTTCTTTCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTGACTGCTGGGCCGAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA 729 45.13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQVNALQLNQSADDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8101437 8105557 + Cp4.1LG17g10640.1 Cpe17g01070 484388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01070 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe17g01070 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe17g01070 242 Coils Coil 126 146 - -
Cpe17g01070 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cpe17g01070 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cpe17g01070 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g01070 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Cpe17g01070 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe17g01070 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cpe17g01070 242 Coils Coil 152 172 - -
Cpe17g01070 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe17g01070 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Cpe17g01070 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe17g01070 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe17g01070 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe17g01070 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00971 Cpe-Chr1:5782719 Cpe17g01070 Cpe-Chr17:8101437 1.42E-126 dispersed
Cpe03g00970 Cpe-Chr3:7616271 Cpe17g01070 Cpe-Chr17:8101437 1.30E-104 dispersed
Cpe09g01155 Cpe-Chr9:9833003 Cpe17g01070 Cpe-Chr17:8101437 2.75E-83 dispersed
Cpe10g00122 Cpe-Chr10:785283 Cpe17g01070 Cpe-Chr17:8101437 4.43E-49 dispersed
Cpe17g01070 Cpe-Chr17:8101437 Cpe20g00089 Cpe-Chr20:477882 6.32E-56 dispersed
Cpe19g01096 Cpe-Chr19:7418452 Cpe17g01070 Cpe-Chr17:8101437 1.77E-49 dispersed
Cpe17g00325 Cpe-Chr17:2207273 Cpe17g01070 Cpe-Chr17:8101437 2.40E-24 transposed
Cpe01g00970 Cpe-Chr1:5779955 Cpe17g01070 Cpe-Chr17:8101437 3.62E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50851 PF01486 K-box 3.50E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01070 - - csv:101216798 480.33