Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01072 ATGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTGGTACACTATAGAGATATTAATGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTGTTGGATCAAATGGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGACATTGATCCATTTTATGGTCACGAGGAACGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGGTTCACGTAAGACAGCTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCGTCTTTGAGTAAAAGTACAACTGTGGACAATGAACATTACAACTTGGTGCACAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAACTACCATATACCCTTTCTTACAGAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTCCACAAGTGCAGAAATTTATAATCCGCCAAATTGTTCCTGAGCAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCGTTGCTACTCACATTCTAGTGGACCTACGAAGAGTCCAGAGGAGCTGTTGTTACTTGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTATGTGTGGGCATTAAACCCAATTCTCAGTTGTGGTGTGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGCTCTGCTGAGGTAGAAGCAGAAATGACTGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACGTTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACAGCAGAAGGAGGCAGTTTTTGCAGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAACGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCGATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTATTCCGCAAAGAAAAAGTGGAAGTTACTATCGATGAGGCTGTTTCACGAGTGCGATCGATGGTTAACTCTCTGGATGCTCGTCAGCAATATCACCGTACGCTTAAAGGATTTCGAGAAGCTAAGCTTGATCTTGCATCATATACACATCCTCGATACGAGTTTATCATTTACATTTTCACGACTTCGCTGAGCTTAATGGTGCCGATCGTTAATCCACAGGATCGACTTCTCTCGTCGACATTTCTGGGACTGAAGATTGTAATCAATATCCTAAGTATGTGTAGGAGCAACTTGGTAGGGATTTGA 2712 41.52 MVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNGADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKDIDPFYGHEERSNSNLIDYYEMSNDDQFSVLQHSENAIHDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALGSRKTADLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSNYHIPFLTEDHGNSFEVDTSLIVPQVQKFIIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSRCYSHSSGPTKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSAEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKVFRKEKVEVTIDEAVSRVRSMVNSLDARQQYHRTLKGFREAKLDLASYTHPRYEFIIYIFTTSLSLMVPIVNPQDRLLSSTFLGLKIVINILSMCRSNLVGI 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8150984 8159154 + Cp4.1LG17g10770.1 Cpe17g01072 484390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01072 903 ProSiteProfiles CG-1 DNA-binding domain profile. 1 50 IPR005559 GO:0003677
Cpe17g01072 903 Pfam CG-1 domain 2 43 IPR005559 GO:0003677
Cpe17g01072 903 ProSiteProfiles Ankyrin repeat region circular profile. 539 565 - -
Cpe17g01072 903 Pfam IPT/TIG domain 316 389 IPR002909 -
Cpe17g01072 903 Gene3D - 409 604 IPR036770 -
Cpe17g01072 903 Pfam Ankyrin repeats (3 copies) 515 598 IPR002110 GO:0005515
Cpe17g01072 903 ProSiteProfiles IQ motif profile. 715 743 IPR000048 GO:0005515
Cpe17g01072 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 765 IPR027417 -
Cpe17g01072 903 SMART ANK_2a 539 571 IPR002110 GO:0005515
Cpe17g01072 903 MobiDBLite consensus disorder prediction 51 104 - -
Cpe17g01072 903 SUPERFAMILY Ankyrin repeat 509 601 IPR036770 -
Cpe17g01072 903 SUPERFAMILY E set domains 317 399 IPR014756 -
Cpe17g01072 903 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 848 - -
Cpe17g01072 903 ProSiteProfiles IQ motif profile. 657 685 IPR000048 GO:0005515
Cpe17g01072 903 ProSiteProfiles Ankyrin repeat profile. 539 571 IPR002110 GO:0005515
Cpe17g01072 903 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 848 - -
Cpe17g01072 903 SMART CG_1_2 1 45 IPR005559 GO:0003677
Cpe17g01072 903 Gene3D - 713 761 - -
Cpe17g01072 903 MobiDBLite consensus disorder prediction 49 107 - -
Cpe17g01072 903 Pfam IQ calmodulin-binding motif 716 734 IPR000048 GO:0005515
Cpe17g01072 903 Pfam IQ calmodulin-binding motif 739 758 IPR000048 GO:0005515
Cpe17g01072 903 CDD IPT 322 400 - -
Cpe17g01072 903 Gene3D Immunoglobulins 311 403 IPR013783 -
Cpe17g01072 903 ProSiteProfiles IQ motif profile. 737 761 IPR000048 GO:0005515
Cpe17g01072 903 SMART iq_5 736 758 IPR000048 GO:0005515
Cpe17g01072 903 SMART iq_5 713 735 IPR000048 GO:0005515
Cpe17g01072 903 SMART iq_5 656 678 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01072 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1318.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00228 Cpe-Chr15:2067654 Cpe17g01072 Cpe-Chr17:8150984 1.90E-12 dispersed
Cpe17g00057 Cpe-Chr17:356934 Cpe17g01072 Cpe-Chr17:8150984 2.53E-10 dispersed
Cpe17g01072 Cpe-Chr17:8150984 Cpe05g01326 Cpe-Chr5:9319250 3.22E-06 dispersed
Cpe01g00967 Cpe-Chr1:5734949 Cpe17g01072 Cpe-Chr17:8150984 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50852 PF12796 Ank_2 2.10E-06 CL0465 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01072 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0