Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01076 ATGACGAAAAAGGGAAGAAAGAAGAGAGAGAAAGCTCGGAAGAAAGGGAAGAGAGAGAAGGGGAGCTCTCTGGGCATGGAAGGCCTGGCCATGCTTAGGCAGCTCATCGGTCAGCTTCAAGAGCTTTTGCAATTCTATCACTCCCATCCTCCTCCACCTCCGCCACCGCCGGCGCACCATCAACTGCCTCTCACCCTAGCTTCTGCTCACCAAAGTGTTATTGGGGATCGGGGAATCGGGGATCGGTTGCGAGTTCGGTGGTGCTTCAAAGATATTGATGACAACTCTGCAGATGATTTTTATGGTCTTGTAATTGCGGCTGGTAGATCAGGAAATTGTCGGATGACCGAAGCTTGTGTGCTTCCACCTGTTAAAAAACCAAGAAAGGAACGGAACCGAGGAAAATTGTCTGGATCAGCAGCTGCAACTGAGGCGATGGATGAAGAAATTTGGAAAGATTTCCCAGAAGACCTTTTTGAAGCTGTCATTGCAAGACTTCCCATTGCTACATTCTTCCGCTTTCGTGCTGTTTGCCAAAGATGGAACTCGCTGCTAAACTCTGAAACTTATGCTCTTTACCGTGCTCAAGTCCCGCAAACTACCCCCTGGTTCTACACCATTACTCATGACATGGTTAGTTCGGGAGCCATATACGACCCTTCTTCCAACAAATGGTACCATCCATCCATTTCATCTCAGCCTGTTAGATTACTCGTCCAGCCTGTTGCATCTGCTGGAGGGCTTGTGTGCTTGCTTGATTTCAGTCATAAGAACTTCTTTGTATGCAATCCTCTAACCCGATCTTTTAAAGAGTTGCCAGCTAGATCAGTTGAAGTGTGGTCTCGTGTTGCAGTAGGGATGACTCTAAATGGAAGTTCGGCCAGTGGGGGCTACAAGATCTTATGTCTGGGCTGTGATGGAGAGTATGAGGTTTACGACTCCATAGAAAACTCGTGGACTCATCCTCGGAGCATGCCTTCTACAATTAAGCTTCCATTAACCCTGAAACACCGCTCACAAGCTGTCTCCATTGACAACTTTGTTTACTTCATGCGTTCGGATCCTGAAGGGATTATGTCCTACAACATGGTCACTGGGATTTGGAATGAGTTTATAGTTCCCTCTCCGCGCCATCTTACAGACCATACACTTGCAGACTTCGGGGGCCGGCTCATGCTCGTGGGGTTGTTGACGAAAAATGCTGCCACATGCGTGTGTATATGGGAGCTGCAGAAGATGACTCTCTTATGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGAGTTTTATGGAAAGCACGTTAGAATGAATTGCTTGGGAAACAAAGGGTTGCTCATGCTGTCCTTAAGATCAAGGCAAATGAACAGATTGGTTACGTACGACGTGACGAGCAAGGAATGGTTGAAGGTTCCCGTGTTGCCTCGCGGGAGGAAGCGACAATGGATAACATGCGGCACTGCATTTTACCCTTGCCCAACTGCTGTGGCTTAA 1497 47.83 MTKKGRKKREKARKKGKREKGSSLGMEGLAMLRQLIGQLQELLQFYHSHPPPPPPPPAHHQLPLTLASAHQSVIGDRGIGDRLRVRWCFKDIDDNSADDFYGLVIAAGRSGNCRMTEACVLPPVKKPRKERNRGKLSGSAAATEAMDEEIWKDFPEDLFEAVIARLPIATFFRFRAVCQRWNSLLNSETYALYRAQVPQTTPWFYTITHDMVSSGAIYDPSSNKWYHPSISSQPVRLLVQPVASAGGLVCLLDFSHKNFFVCNPLTRSFKELPARSVEVWSRVAVGMTLNGSSASGGYKILCLGCDGEYEVYDSIENSWTHPRSMPSTIKLPLTLKHRSQAVSIDNFVYFMRSDPEGIMSYNMVTGIWNEFIVPSPRHLTDHTLADFGGRLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHVRMNCLGNKGLLMLSLRSRQMNRLVTYDVTSKEWLKVPVLPRGRKRQWITCGTAFYPCPTAVA 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8173692 8178685 - Cp4.1LG17g10810.1 Cpe17g01076 484394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01076 498 MobiDBLite consensus disorder prediction 1 24 - -
Cpe17g01076 498 Pfam F-box domain 151 187 IPR001810 GO:0005515
Cpe17g01076 498 ProSiteProfiles F-box domain profile. 148 196 IPR001810 GO:0005515
Cpe17g01076 498 SMART fbox_2 154 194 IPR001810 GO:0005515
Cpe17g01076 498 MobiDBLite consensus disorder prediction 1 16 - -
Cpe17g01076 498 SUPERFAMILY Galactose oxidase, central domain 212 486 IPR011043 -
Cpe17g01076 498 Gene3D - 205 487 IPR015915 GO:0005515
Cpe17g01076 498 TIGRFAM F_box_assoc_1: F-box protein interaction domain 247 411 IPR017451 -
Cpe17g01076 498 Gene3D - 151 190 - -
Cpe17g01076 498 PANTHER F-BOX/KELCH-REPEAT PROTEIN 89 498 - -
Cpe17g01076 498 SUPERFAMILY F-box domain 148 229 IPR036047 GO:0005515
Cpe17g01076 498 PANTHER BNAA07G08860D PROTEIN 89 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01076 - - - mcha:111022588 806.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02444 Cpe-Chr1:20280164 Cpe17g01076 Cpe-Chr17:8173692 7.05E-31 dispersed
Cpe02g00306 Cpe-Chr2:1596206 Cpe17g01076 Cpe-Chr17:8173692 3.46E-25 dispersed
Cpe03g01132 Cpe-Chr3:9275711 Cpe17g01076 Cpe-Chr17:8173692 6.44E-19 dispersed
Cpe06g00272 Cpe-Chr6:1482989 Cpe17g01076 Cpe-Chr17:8173692 2.99E-22 dispersed
Cpe17g01076 Cpe-Chr17:8173692 Cpe20g00277 Cpe-Chr20:1553934 3.54E-24 dispersed
Cpe17g01076 Cpe-Chr17:8173692 Cpe13g00993 Cpe-Chr13:8208739 1.67E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1260 Blo01g00179 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo12g00276 . . . . . . . . . . . . . Cpe17g01076 . Bhi12g02463 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005573 1 3 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01076 Cpe_Chr17 FPKM 22.358116 28.147335 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0