Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01078 ATGAGTATTATGCATGATATGAAATGGGTACTCCTCCACAGGAAGCCATGGTATCAAAGAGCAATGGAAATAGTAGGAACCCAATGGAGAACAACATCTTCAAAATCAAGAGATCAATACCCAATTCCATCACCAAATGGAGCATTGAATTCCAACAACAACAATAAACACAACAAAATGAGAAAATGCACTTCTCTCAAGATAGCAACTTCCTTCACAAGAGTATGTCTTTGTGCACCCATCTCTTCTTACAATGAAATCTTCCAACAAGCTGACATCCCACCAAGGAGAAGCCATAGCTATCCAAGATCTAAGCCTTTTCCTACTACTAGTAATATCGTTCTTCCAACTCCTCGACTTAGCGGTGAAAATAGTCGACGGGTTTTCCGGGGAAAGTCCCTCACCGACGACGTTTTGATGCGGAGATTCGTCGTGGAAGAAGAGGCTATGATGCAAGTTAGGAGAAGAAACCAAATGGATGTTATAAGGAAGAGGAATTTGATGAGAAGGAAGAAGCTTGGTCCAAGCCCTCTTAGCAAAATGGTTATAGCTGAGGAATAA 561 41.35 MSIMHDMKWVLLHRKPWYQRAMEIVGTQWRTTSSKSRDQYPIPSPNGALNSNNNNKHNKMRKCTSLKIATSFTRVCLCAPISSYNEIFQQADIPPRRSHSYPRSKPFPTTSNIVLPTPRLSGENSRRVFRGKSLTDDVLMRRFVVEEEAMMQVRRRNQMDVIRKRNLMRRKKLGPSPLSKMVIAEE 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8190891 8191451 - Cp4.1LG17g10850.1 Cpe17g01078 484396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01078 186 MobiDBLite consensus disorder prediction 29 57 - -
Cpe17g01078 186 PANTHER SERINE/THREONINE-KINASE 3 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01078 - - - cmax:111497548 317.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1325 . Blo12g00274 Bda03g00961 . Bpe04g00889 . . . Cmo08g00189 . . . . . . . . . . . . . . . Cla06g00103 Cam06g0112 Cec06g0115 Cco06g0114 Clacu06g0116 Cmu06g0114 Cre06g0884 Cone14ag0617 Cone15ag0624 . . . . . . . . . . . . . . Sed09g0393 . . . . . . . Cpe17g01078 Bhi12g02467 Tan06g1529 Cmetu11g0399 . Hepe03g1101 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011148 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 0 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01078 Cpe_Chr17 FPKM 15.201819 17.645035 11.316938 10.454247 14.511436 13.216846 14.269381 12.637264 11.943206 14.010242