Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01080 ATGGGCAAGAGAAAGAGTCATAAGCAAGAAAAAAGGAACTCTAAGAGAAGAGTTGCAGACGATGATGCTGCCTCTGAAGATATGGACGATGAAATTGATGCCTTTCACAGGCAGAGAGATGTTATTCCACTTGATATTAATGGTGATGCTCCGGAGTCAGATGAAGATGCTGAGCATCCTGTTTTTAATTTAGAGGGTGTTGACGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAGGATGATGATGAAGAAGATATCCGTGATACTGGTTTTGCTGCAAAAATTGCCAGACAACAGAAGTTCTTGCGGGAAAAGTTTGGTGGCGTAGATGATGAAATGCACGAGGATGAAGATGAGGACATGGAAGAACAAAAGACTATATGGGGCGGAAGGAAAGGCAAATACTATGATGCTGATAATCGTGATTTTGAAATCCAATCAAGTGATGATGAGTCCCTTGCCGAAGAGGAGGAAGAGGTAATTCGATTGCAGAAGGAGAAAGCAAAAACTTTCTCATTGGAAGATTTTGGCATTGACGATGAGAGTGATAGGGAGTTAACTCTAGAGGAAATATCTGCAAAAGGAATTGATCCAAAGACTTCAACCAGAAATGAAGCTCCAGATGATATGAATGCTACATATCAGGAGATTGCTAAAGACGTGAATTCTCTTACAAGGGAGGAGCAGATGGATGTCTTGAACAGTTCTGCTCCAGAGTTAATTGGTTTGCTGTCCGAATTGAATGAAGCAGTGGATCAACTTGAGAACAAAATTAATCCAGTTTTAAACAAGGTTAAAAACGGGAAAATTGCAGTGGGAGCAGGACTGCAATATTTGGAGTTAAAGCAGCTTATTTTGCTCTCTTATTGCCAATCTATAGCCTTCTATCTTCTCTTGAAGTCTGAAGGGCAAGCAGTACGAGATCATCCTGTAATAGCTCGGCTTGTAGAGATAAAAAGCTTATTGGATAAGGTGAAACAACTTGACGAGAATCTTCCATCCGAGTTAGAAGAGATCATTAACAAATATCATCAAGAAGAAACAGATGTAAAACTGAACAAAGAGCATGCTTCTGTTTTAGCTGAGCTCTTCACAAAAGATCAGGGGTCTTCTCATCACGCTTCTGATGGCCAAGAAGTGGGATTGCCCAATGCAAAGACCGGATCAGACAACGTGGATAAATTGAAGGAGAAAGGCAAGAAAGAAGGAAAGCATAAACAAGTGGACAATCAAATGGGTGTCCAGAGCATGGAAATGAAGCTCGAAGCATATGACGATTTTAAGGATGATACTGATGCTCAAGCTGCTAAGAGGAAGGGCCGAGATACTTCTGCCGGTGCAGCAGATCTCACACGTCTTGTTGTCGCCAAGCTGAAGAAGCCAAAGGTCATTTCTGGTGATGATGATTTGCCTACAAGAGATGATATTGGAGAAAGACGAAGGAAATATGAACTTCAAATGCTGGCGAGAGCTGGATTCAAGTCAAAGGACGGCACTAGCGTTCTTGAGAGTGAAAGCGACGGTGATGAGGATGATGTGAAAGGAAATGGTGAAGCAGATTCTGAAGATGAATTCTACAAGGAATTTAACATTTCCTCTCCTTTATATCATTATGTTAATGCACAACATTGTCTAACAAACAACTTCTGCAGGACGACGGAAATTCCATCGTCTCCGAAAACTGTGGATGGAAAACGCAAAATCACTTATCAAATGGAGAAGAACCGAGGCTTAACTCGACCTCGAAAGAAGTTGACGAAGAACCCAAGAAAGAAATACAAGTTGAAGTTTAAAGATGCAGCTAATCGTCGTAAAGGTCAAGTCCGAGAAGTTAAGCAGCCTATTCATTCGTACGGTGGAGAGACGACGGGAATTAACACAGGAATCAGTCGGAGCATCCGGTTTAAAAGTTAG 1947 41.24 MGKRKSHKQEKRNSKRRVADDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEGVDDEDEDEDEDEDEDEDEDEDEDEDDDEEDIRDTGFAAKIARQQKFLREKFGGVDDEMHEDEDEDMEEQKTIWGGRKGKYYDADNRDFEIQSSDDESLAEEEEEVIRLQKEKAKTFSLEDFGIDDESDRELTLEEISAKGIDPKTSTRNEAPDDMNATYQEIAKDVNSLTREEQMDVLNSSAPELIGLLSELNEAVDQLENKINPVLNKVKNGKIAVGAGLQYLELKQLILLSYCQSIAFYLLLKSEGQAVRDHPVIARLVEIKSLLDKVKQLDENLPSELEEIINKYHQEETDVKLNKEHASVLAELFTKDQGSSHHASDGQEVGLPNAKTGSDNVDKLKEKGKKEGKHKQVDNQMGVQSMEMKLEAYDDFKDDTDAQAAKRKGRDTSAGAADLTRLVVAKLKKPKVISGDDDLPTRDDIGERRRKYELQMLARAGFKSKDGTSVLESESDGDEDDVKGNGEADSEDEFYKEFNISSPLYHYVNAQHCLTNNFCRTTEIPSSPKTVDGKRKITYQMEKNRGLTRPRKKLTKNPRKKYKLKFKDAANRRKGQVREVKQPIHSYGGETTGINTGISRSIRFKS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8198801 8205968 - Cp4.1LG17g10840.1 Cpe17g01080 484398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01080 648 MobiDBLite consensus disorder prediction 401 419 - -
Cpe17g01080 648 MobiDBLite consensus disorder prediction 515 529 - -
Cpe17g01080 648 MobiDBLite consensus disorder prediction 507 531 - -
Cpe17g01080 648 PANTHER SOMETHING ABOUT SILENCING PROTEIN 10 6 646 - -
Cpe17g01080 648 PANTHER SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 6 646 IPR007146 -
Cpe17g01080 648 MobiDBLite consensus disorder prediction 65 97 - -
Cpe17g01080 648 MobiDBLite consensus disorder prediction 117 137 - -
Cpe17g01080 648 Coils Coil 329 349 - -
Cpe17g01080 648 MobiDBLite consensus disorder prediction 377 396 - -
Cpe17g01080 648 Pfam Sas10/Utp3/C1D family 255 335 IPR007146 -
Cpe17g01080 648 Coils Coil 248 275 - -
Cpe17g01080 648 MobiDBLite consensus disorder prediction 1 103 - -
Cpe17g01080 648 Pfam Sas10 C-terminal domain 574 646 IPR018972 -
Cpe17g01080 648 MobiDBLite consensus disorder prediction 377 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01080 K14767 UTP3, SAS10; U3 small nucleolar RNA-associated protein 3 - csv:101211748 874.389
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00482 Cpe-Chr2:2764543 Cpe17g01080 Cpe-Chr17:8198801 1.50E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1317 . . . . . . . . Cmo08g00192 . . . . . . . . . . . . . . . Cla06g00101 Cam06g0114 Cec06g0113 Cco06g0112 Clacu06g0114 Cmu06g0112 Cre06g0882 . . . . . . . . . . . . . . . . Sed09g0151 . . . . Car08g00170 . . Cpe17g01080 Bhi12g02474 Tan06g2240 Cmetu05g1545 Lac12g1976 . . Lcy13g0854 . . . . . . . . . . Cme11g02437
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005413 1 6 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 3 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01080 Cpe_Chr17 FPKM 22.874485 26.212973 35.259998 32.072205 33.028553 27.831059 34.06094 62.637665 68.066551 71.375679