Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01083 ATGCAAAGCTCCACCAGCCAGTCGTCGGAGTACTCACTCGACCACTCTCCGCCCGCCGCTGCTGGAAAATGGTCCTCCACCCTTCTCAACGAGTGTGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGCGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTTTGCAGAGCTACCGAAACCGGCCTCACTTGCTACAAAACCCTCGTCACCGTTTCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGAGCAATTCTCGAAGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACACTATTAGAATCGCTAGCTACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGACGAAGCCATCGCTATAAATTGCAATGGAGCTTTAAGAACGGTAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCATAAGCTCGAAAAATAAGTTTTTGAGCTGTTTCGATGAGTGTCTTAGATTTTACACGCTCTACTTCGAGATGTTGGAAGAGAGCTTTGAAGCAACGAGTAATGAGAAATTGGGTTTAGAAAGAGAGTGTTCGAGAAATATTGTGAGGCTCTTGGGGTGTGGTAATGAAACCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCGAAAGGCTTGAAGAACGAGGTTTTTCATCGGCTCGATTTTGTGACGATGTGATGGACGACGTTAAGGCTTTGCTCAAAAGGTATAAACCCGGTTGGGCGTTGATGCATCGGACCGGTGCTATCGACACGAACCGAGATGAAGAAGAAGGTGGTGATGATTCGAGTGGAATTTATTTGACATGGAAGGAAGAACCAGTGGTGTGGATTTCAGCATGGAAACCCTAG 1248 46.23 MQSSTSQSSEYSLDHSPPAAAGKWSSTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTVKIEERNAVISMLKSLKPRVLTIVEEEADFISSKNKFLSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRLLGCGNETELERELTSERREKGKQWSERLEERGFSSARFCDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEEPVVWISAWKP 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8221440 8222819 + Cp4.1LG17g10750.1 Cpe17g01083 484401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01083 415 ProSiteProfiles GRAS family profile. 16 414 IPR005202 -
Cpe17g01083 415 Pfam GRAS domain family 27 414 IPR005202 -
Cpe17g01083 415 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 414 IPR005202 -
Cpe17g01083 415 MobiDBLite consensus disorder prediction 1 20 - -
Cpe17g01083 415 PANTHER PROTEIN SHORT-ROOT-LIKE 6 414 - -
Cpe17g01083 415 Coils Coil 288 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00479 Cpe-Chr10:2826893 Cpe17g01083 Cpe-Chr17:8221440 1.33E-152 dispersed
Cpe17g00461 Cpe-Chr17:3432039 Cpe17g01083 Cpe-Chr17:8221440 1.42E-42 dispersed
Cpe17g01083 Cpe-Chr17:8221440 Cpe19g00670 Cpe-Chr19:5347677 6.63E-152 dispersed
Cpe12g00520 Cpe-Chr12:5328514 Cpe17g01083 Cpe-Chr17:8221440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50854 PF03514 GRAS 1.40E-94 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01083 - - csv:101206730 670.618