Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01086 ATGGCGAATCTCGTTCCTGGAGTGCTTCTTAAACTGTTGCAGCATATGAACACTGATGTGAAGGTTGCCGGAGAGCACAGGTCGGCGTTGTTGCAAGTTGTGAGTATAGTTCCGGCATTGGCCGGCGGCGATCTTTCACCGAATCAAGGTTTTTATCTCAAAGTCTCTGATTCTTCTCATGCTACTTATGTTTCATTGCCTGATGAACATGGTGATCTGATTCTTAGTGATAAGATTCAATTGGGTCAGTTTATTCATGTTGAACGCCTTGAGTCTGCGTCCCCTGTCCCCGTTCTTCAAGGCGTTCGACCGGTGCCCGGTCGACATCCTTGTGTAGGTAGCCCTGAAGATATTGTTGCTACTCATTCTCCTGGATTTCTTAACAATAATCCTAACTTGAAAGAGAAATCGAAACCGACCCTGAAAGTTTTAGGCATTGTCGGGGAGAAGGAGAAATCTCTGCCTGTTAGACTCAATGGCAATGTCAAGGAGGATAAGATTGAGAAGAAATCCTCATCGTTGAGTAGATCCAAGTCTCAGTTGTCGAAATTGGCGGTGAATATCGATGCGAAAAAGGAGCCTCTAACGAGACTTAAGTCGATGAATTCACGGTCGATACCTTCCTCTCCGACGAGCTGTTATTCATTGCCTTCTTCGTTTGAGAAGTTTGCTAACAGCATTAAGCATCAGGGGAAGGTTAAAGCGTTGGCTAATGGAACGGCCAAGGTAGGGGCGGTTGAGAAGTCGAATTCTGTTCGTTCGGCCAGTCCCGTTGCTAAGAAGATGGGAGTGGGACATCAATTCAAGCATTTAGTTCAGGGCATTGAGGTTGGGGCTAAGGCTCTGAGGAAGAGTTGGGAAGGGAATATGGAGACAAAAAGACGAGACAATTCGATATTAAGAGCTACCAAACTCGATCCCAAGTCCGAAGCTCGGGTTACTACTCCTAGAAGAAGTACATCGAGCGAGAAGTTGCCATCGAGAGAGGAGAATAGGATTCAGGTACCTGCAAAGTCATCTAAAGACGATCATAGCGTGCACATGTCTTCACGGAAGAATGCCGCTAACGGAGCCTTAGATGATCAAGATAGGTCCAATAGGCAAAAATCTTCCGGTGGAAAGAAATCCTCGAGCGATGCAGGCGGATTCCCCGGGAATTTGGTGAAGATTCCTCTTAGTCATAAAAGATTGACTGAAGGGAGTGCCTCATGGGCTTCACTTCCATCATCTCTTGCCAAGCTTGGAAAGGAAGTAATGAGGCACAGAGATGCTGCACAAGCAGCAGCAATAGAGGCTATGCAAGAAGCTTCAGCTGCCGAAAGCGTGCTACGGTGTTTAAGTATATTTTCCGAGTTAAATGCTGCTGCGAAGGAGGATAATCCACAGCCTGCAGTAGAACAGTTTTTGACCCTTCATGCTAGCCTGACCAATGCTCATATGGTGGCTGAATCTCTTTCGAAAACGGGTCCCTCTGGTTCGATCAATGAGAGCGAAGAAACCGCTTCAGAAGAAACGATGAAGGTCTCGTTAAAGGCTAGAAAACAGGCATCTGCTTGGGTCCTGGCTGCTTTAGCCACCAACATGTCGTCTTTCGCAGTTTATAGCCGTGATCCACCCTCGGCTCTAAATCCGACCTCGTCTCTATCCCAATACCAAAAGAATGCATCTGCAAATCAGCCTATAGTAGTGTTAGAAAACTCGTCTAAGAACAGCTCGTCGAAATCCCAAGGGAAGGTTCGCCAGATGATAAACTCTAAACCGATTGGATCAGGAAATCCCGGTCGAACCAAGGAGGGAACGACACTCGGTCAAAAGTTGCAGACTCAACCTCCCCCAGAATGGATCAGAGGAAATGGTCTCGACGAAGCGGTTGACTTGGCCGAGATGTTACGGCTGCAATCCCAGGACTGGTTCTTGACATTCATGGAAAGGTTCTTGGATGCAGGCGTCGACACAGCAGCATTGTCGGATAACGGACAAATAGCAGGAATCTTGACTCAGCTCAAGAGCGTAAACGACTGGTTAGATGGCATAGCTTCTACCAAAGACGAAGAAGACCCCACCGACATTTCGACCGAGACAATCGACAGGCTGAGGAAGAAGATCTACGAATATCTTCTCATGCACGTCGAGTCTGCAGCCGCTGCACTTGGCGGGGGAGCGCAGCAACTGCCACAGCAGATACAGGCAACCGGGATGAAAGCCAAAAGGTAA 2214 47.7 MANLVPGVLLKLLQHMNTDVKVAGEHRSALLQVVSIVPALAGGDLSPNQGFYLKVSDSSHATYVSLPDEHGDLILSDKIQLGQFIHVERLESASPVPVLQGVRPVPGRHPCVGSPEDIVATHSPGFLNNNPNLKEKSKPTLKVLGIVGEKEKSLPVRLNGNVKEDKIEKKSSSLSRSKSQLSKLAVNIDAKKEPLTRLKSMNSRSIPSSPTSCYSLPSSFEKFANSIKHQGKVKALANGTAKVGAVEKSNSVRSASPVAKKMGVGHQFKHLVQGIEVGAKALRKSWEGNMETKRRDNSILRATKLDPKSEARVTTPRRSTSSEKLPSREENRIQVPAKSSKDDHSVHMSSRKNAANGALDDQDRSNRQKSSGGKKSSSDAGGFPGNLVKIPLSHKRLTEGSASWASLPSSLAKLGKEVMRHRDAAQAAAIEAMQEASAAESVLRCLSIFSELNAAAKEDNPQPAVEQFLTLHASLTNAHMVAESLSKTGPSGSINESEETASEETMKVSLKARKQASAWVLAALATNMSSFAVYSRDPPSALNPTSSLSQYQKNASANQPIVVLENSSKNSSSKSQGKVRQMINSKPIGSGNPGRTKEGTTLGQKLQTQPPPEWIRGNGLDEAVDLAEMLRLQSQDWFLTFMERFLDAGVDTAALSDNGQIAGILTQLKSVNDWLDGIASTKDEEDPTDISTETIDRLRKKIYEYLLMHVESAAAALGGGAQQLPQQIQATGMKAKR 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8235964 8239939 + Cp4.1LG17g10730.1 Cpe17g01086 484404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01086 737 MobiDBLite consensus disorder prediction 288 387 - -
Cpe17g01086 737 MobiDBLite consensus disorder prediction 485 499 - -
Cpe17g01086 737 MobiDBLite consensus disorder prediction 288 313 - -
Cpe17g01086 737 Pfam Plant protein of unknown function (DUF936) 4 717 IPR010341 -
Cpe17g01086 737 MobiDBLite consensus disorder prediction 566 608 - -
Cpe17g01086 737 MobiDBLite consensus disorder prediction 322 349 - -
Cpe17g01086 737 MobiDBLite consensus disorder prediction 566 614 - -
Cpe17g01086 737 PANTHER EXPRESSED PROTEIN 1 736 IPR010341 -
Cpe17g01086 737 PANTHER DUF936 FAMILY PROTEIN 1 736 - -
Cpe17g01086 737 MobiDBLite consensus disorder prediction 485 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01086 - - - cmax:111497684 1331.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01146 Cpe-Chr4:9843302 Cpe17g01086 Cpe-Chr17:8235964 2.30E-28 dispersed
Cpe11g00004 Cpe-Chr11:17914 Cpe17g01086 Cpe-Chr17:8235964 1.15E-08 dispersed
Cpe11g00772 Cpe-Chr11:6249581 Cpe17g01086 Cpe-Chr17:8235964 5.57E-16 dispersed
Cpe12g00793 Cpe-Chr12:7170887 Cpe17g01086 Cpe-Chr17:8235964 5.70E-18 dispersed
Cpe17g01086 Cpe-Chr17:8235964 Cpe17g00441 Cpe-Chr17:3291168 3.79E-12 dispersed
Cpe17g01086 Cpe-Chr17:8235964 Cpe07g00004 Cpe-Chr7:18897 2.69E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1214 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00217 . . . . . . Cone14ag0689 Cone15ag0711 . . . . . . . . . . . . . . . . . . . . . Cpe17g01086 . . . . . . . . . . . . . . . . . . .
Vvi5g1277 . . . . . Bpe14g01063 . . . Cmo17g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00449 . Bda11g00478 Bda13g00251 . . Bma02g00967 . . . . . Cma17g00609 Car08g00175 Car17g00576 . Cpe17g01086 . . . . . . . . . . . . . . . . . Cme11g02453
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009199 1 1 2 1 2 1 2 0 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01086 Cpe_Chr17 FPKM 1.206667 0.412988 2.327564 3.139071 2.640113 3.288571 2.05969 4.793762 5.184557 5.342078