Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01087 ATGAGCCGACAGCAACTGTATAGGGACTCGGACGTTACGGAGATGTCTTCCAACAGCTTGTGGGTAGGCAACTTGTCCATGGATGTCACGGATACGGATCTCATGAATATGTTTGCGCAGTTTGGGGCGATTGATAGTGTTTCTTCCTATCCTTCCAGGAGTTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCTCAAGCGGCTAAGGAGGCTCTTCAAGGGGTTTTTCTGCGTGGGAGTTCAATCAAAATCGAGTTTGCGAGACCGGCCAAACCTTGTAGGAATTTATGGGTCGGCGGTATTAGTCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCTAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGGAATACTGCATTTATTGAGTATGTTCGATTAGAAGATGCATCACAAGCTTTGAGAATCATGAACGGTAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGATCACAGCCAATGAGAAGAGATCAGTGGCCCGACTCCAGAGATGGGCATGGACAGCTTCAGGGTAGAAATGTGGGGATGGCTGATTTCCAATCTGGTTATAAAAGACCACTGCATACTCAATCTTCAGAACTACGTAGAGATGGACCTCCCAGCAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCAATGATTTTATTTGGTGAAATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCTAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGCACCTGTAAAAGAACACCCTGGCTTTTATCCTGGTGGTAAAGAGACTAGGCCTGAAATGTTCTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACATGTTAGGACATCCTCACCCAATGGTGCAAAATAAGTTCCCTGGTCCATTGCCAGCTAATGGCATTCTTGGACCAAATACAGCAGTAAGACCACCACCCTTTGGTCCTCCACAGGGTATCTCAGGCCTTCCTGAGTTTAATGACTTCACGACATCCCATGGTTTCCATGATGCAAATTCAAAAAATGTGTTGGGTCCAAATTGGAGAAGGCCATCTCCTCCTGCACCTGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCTGTGAGGTCCACTCCAAATTCGTGGGATGTTTTGGATGTAAACCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCATCATCCTTAGACGATGCTTCTTTTCCTCCAAGAAAAATGGATAACCGGGGCATGGGTTTTGATCAGCAATATGGGGTTGGTCCATTAAGTGATGGAGGATCTTCTGTTTCATATACCAATGCTCCTGTGAAGACTCATGCTATCCCTATAGGTGCAAGGGCACCAGTTAGTGGCCAGAGCCATGGTGACAATGATTTTATATGGCGTGGAATAATTGCCAAGGGTGGAACGCCTGTTTGTCATGCTCGTTGTGTCCCCATAGGCGAAGGAATAGGAAGTGATCTTCCTGAAGCAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTTGCTAAACATTATGCTGAAGCCACTGGATTTGACATTGTCTTTTTCTTGCCAGACAGCGAGGATGACTTTGCATCCTATACAGAATTCCTGCGTTACCTCGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAATTTTTGAGAAAAGTCTTGAAAGTTGCGGGCCCAGAACGGCTTTATGGTCTCATTCTCAAATTTCCCCAGGTTCCTCTTAGTGAACCGACTCACCAGCAGTCCTATCTACCCATTCCTACATCTGACTATGGTGAGAGACAGCAAGTCTCGTCTTCACGAGCTGAATACGGGTCAGTGCCTTCAAAGCAGGAGCAACTTCTTCCAATGGATTATAATAGGGTTCTGCATGAGGAAACCAAGGAACCCCCGAAACCCCTTCTGCCTTCAAGTGAGCCACCATCTGTTCAGTCCTTGCCTCACGAGTATGTTACTAACAATAATACGGCTGCAGTCTCACAAGCTGGGTTATCATTAACACCAGAGCTTATTGCCACCTTAGTTTCTTTACTGCCTGGCAAGACACAGTCGTCCAGTTTAGAAAGTGCCAAGCAACCAGCCATCTCACCACAGCCTCCAATGCCTACTGTTGATTCTAATAAAGGGACTACATCTGAGGGATGGATTGGTCATCAATCTTCTGAGCTAACCGGTCAGCCATTTCAGCAAATGGAAAATCATTTTAATTCTCAGGGACAAAGTCTTTCTCAATTTCAGCCTTATCCACCTCTCCCGCGAACACCAAACCAGCATGCACCACAGATCATGGGAGCAACCCAAATTCAAGATGCTGCTGTCGGTCTGCCACAGCAGCAGCATGTACCTATTCCTTACAGGCCTTTGTCTACTTATTCTGCCCCTCCTGAGAATGCACAAGCTTCTGGTTTGCCCTTTGTCAATCCTCAGTATCAGCACGATGTTTCTCAAATTAACCAGAGAGGTTATGGGTCAGTCAATGAAGTTGATACTTCTGGGTATGGTGCACCAGTTGTGCAGCAATCAACGAATACTGCGACCTTATCTAATCAAGGTCAGGGTTCTACATCACAGCCACAACCTGTTACCCATTTAGCATCTGATAGGGGGAACCCTGAGCTTCCTTATCAGATGGAGCATCTCCAATCTGCAAACCTTGGCGCTGGCAATGGGACCAGTGATGTTGAGGCTGGTAAGGACCAGAGATATCGATCTACGCTTCAATTTGCCGCAAATTTACTCCTTCAGATCCAGCAGCAGCAGCAGCAGCCACAGCAAGCAGGCTGGGGTTCAGGAAATCAATAA 2994 45.52 MSRQQLYRDSDVTEMSSNSLWVGNLSMDVTDTDLMNMFAQFGAIDSVSSYPSRSYAFIFFKHMEDAQAAKEALQGVFLRGSSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFIEYVRLEDASQALRIMNGKRIGGDQIRVDFLRSQPMRRDQWPDSRDGHGQLQGRNVGMADFQSGYKRPLHTQSSELRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPAPVKEHPGFYPGGKETRPEMFFNEHQIRPPQMDMLGHPHPMVQNKFPGPLPANGILGPNTAVRPPPFGPPQGISGLPEFNDFTTSHGFHDANSKNVLGPNWRRPSPPAPGILSSPATGIRPPPPVRSTPNSWDVLDVNQFQRDSKRSRIDGPSSLDDASFPPRKMDNRGMGFDQQYGVGPLSDGGSSVSYTNAPVKTHAIPIGARAPVSGQSHGDNDFIWRGIIAKGGTPVCHARCVPIGEGIGSDLPEAVNCSARTGLDQLAKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVAGPERLYGLILKFPQVPLSEPTHQQSYLPIPTSDYGERQQVSSSRAEYGSVPSKQEQLLPMDYNRVLHEETKEPPKPLLPSSEPPSVQSLPHEYVTNNNTAAVSQAGLSLTPELIATLVSLLPGKTQSSSLESAKQPAISPQPPMPTVDSNKGTTSEGWIGHQSSELTGQPFQQMENHFNSQGQSLSQFQPYPPLPRTPNQHAPQIMGATQIQDAAVGLPQQQHVPIPYRPLSTYSAPPENAQASGLPFVNPQYQHDVSQINQRGYGSVNEVDTSGYGAPVVQQSTNTATLSNQGQGSTSQPQPVTHLASDRGNPELPYQMEHLQSANLGAGNGTSDVEAGKDQRYRSTLQFAANLLLQIQQQQQQPQQAGWGSGNQ 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8241363 8252364 + Cp4.1LG17g10910.1 Cpe17g01087 484405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01087 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Cpe17g01087 997 SMART rrm1_1 219 287 IPR000504 GO:0003723
Cpe17g01087 997 SMART rrm1_1 96 163 IPR000504 GO:0003723
Cpe17g01087 997 SMART rrm1_1 19 86 IPR000504 GO:0003723
Cpe17g01087 997 SUPERFAMILY RNA-binding domain, RBD 213 297 IPR035979 GO:0003676
Cpe17g01087 997 MobiDBLite consensus disorder prediction 748 776 - -
Cpe17g01087 997 MobiDBLite consensus disorder prediction 383 457 - -
Cpe17g01087 997 SUPERFAMILY RNA-binding domain, RBD 12 92 IPR035979 GO:0003676
Cpe17g01087 997 MobiDBLite consensus disorder prediction 909 936 - -
Cpe17g01087 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 161 IPR000504 GO:0003723
Cpe17g01087 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Cpe17g01087 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 284 IPR000504 GO:0003723
Cpe17g01087 997 MobiDBLite consensus disorder prediction 642 674 - -
Cpe17g01087 997 CDD RRM3_Spen 20 89 - -
Cpe17g01087 997 CDD RRM3_Spen 220 290 - -
Cpe17g01087 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 291 IPR000504 GO:0003723
Cpe17g01087 997 MobiDBLite consensus disorder prediction 909 928 - -
Cpe17g01087 997 Gene3D - 204 298 IPR012677 -
Cpe17g01087 997 SUPERFAMILY RNA-binding domain, RBD 92 189 IPR035979 GO:0003676
Cpe17g01087 997 CDD RRM3_Spen 97 166 - -
Cpe17g01087 997 Gene3D - 2 91 IPR012677 -
Cpe17g01087 997 MobiDBLite consensus disorder prediction 690 709 - -
Cpe17g01087 997 MobiDBLite consensus disorder prediction 642 671 - -
Cpe17g01087 997 MobiDBLite consensus disorder prediction 395 421 - -
Cpe17g01087 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Cpe17g01087 997 Gene3D - 92 203 IPR012677 -
Cpe17g01087 997 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 8 996 - -
Cpe17g01087 997 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 996 - -
Cpe17g01087 997 Pfam SPOC domain 505 624 IPR012921 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01087 - - - cmos:111456063 1718.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01323 Cpe-Chr5:9292817 Cpe17g01087 Cpe-Chr17:8241363 6.90E-06 dispersed
Cpe14g00750 Cpe-Chr14:5718187 Cpe17g01087 Cpe-Chr17:8241363 5.72E-10 dispersed
Cpe17g01087 Cpe-Chr17:8241363 Cpe03g00220 Cpe-Chr3:1095203 1.49E-07 dispersed
Cpe17g01087 Cpe-Chr17:8241363 Cpe16g00367 Cpe-Chr16:5343393 2.76E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01087 Cpe_Chr17 FPKM 0.0 0.165248 0.0 0.0 0.171855 0.144497 0.330522 0.540971 0.517098 0.0