Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01088 CTCAAAATTCCTCAGCCACAAACCAATCCACCTCCACAGCCACACAAATGGCGTCCACCCTTTTCCGCCTCGTTGTCTCTTCCACCTTTCTTGCTTTCCATGTCCAAAAATCTAAACCCTTATCGTCTCACCCACCATTTACTCCCCCTTCCTTCTACCCCTTCTCTTCTACCTTTTTCTCCACTAACAATCGGTTTCCGTTCTTCTTCTGTTCGATCTTTTCCGGTCGGAGTTGCTGTTTTTCTCTCAAAATTTCATGGATTTGATGGTCTCGGAGTAGAAAAAAGGGCGGAGAGGGATAAGATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTTCCCAAATGCGACATATGCCAAGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCGTCTGACAAGCAGAAAGAAGATCTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCACTCACATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA 1017 46.71 LKIPQPQTNPPPQPHKWRPPFSASLSLPPFLLSMSKNLNPYRLTHHLLPLPSTPSLLPFSPLTIGFRSSSVRSFPVGVAVFLSKFHGFDGLGVEKRAERDKMKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGNALTYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8252826 8256144 + Cp4.1LG17g10890.1 Cpe17g01088 484406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01088 338 CDD Bbox1_BBX-like 157 199 - -
Cpe17g01088 338 PANTHER B-BOX ZINC FINGER PROTEIN 24 102 338 - -
Cpe17g01088 338 ProSiteProfiles Zinc finger B-box type profile. 153 200 IPR000315 GO:0008270
Cpe17g01088 338 Gene3D Classic Zinc Finger 101 200 - -
Cpe17g01088 338 Pfam B-box zinc finger 154 196 IPR000315 GO:0008270
Cpe17g01088 338 Pfam B-box zinc finger 104 145 IPR000315 GO:0008270
Cpe17g01088 338 ProSiteProfiles Zinc finger B-box type profile. 101 148 IPR000315 GO:0008270
Cpe17g01088 338 SMART bboxneu5 101 148 IPR000315 GO:0008270
Cpe17g01088 338 SMART bboxneu5 153 200 IPR000315 GO:0008270
Cpe17g01088 338 CDD Bbox1_BBX-like 106 148 - -
Cpe17g01088 338 PANTHER B-BOX ZINC FINGER PROTEIN 22 102 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01088 - - - csv:101215327 446.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00385 Cpe-Chr7:2483126 Cpe17g01088 Cpe-Chr17:8252826 7.82E-37 dispersed
Cpe10g00649 Cpe-Chr10:3738125 Cpe17g01088 Cpe-Chr17:8252826 7.88E-26 dispersed
Cpe14g00359 Cpe-Chr14:2185559 Cpe17g01088 Cpe-Chr17:8252826 1.60E-08 dispersed
Cpe15g00559 Cpe-Chr15:6419234 Cpe17g01088 Cpe-Chr17:8252826 1.21E-33 dispersed
Cpe16g00269 Cpe-Chr16:4700975 Cpe17g01088 Cpe-Chr17:8252826 8.70E-32 dispersed
Cpe19g00845 Cpe-Chr19:6255132 Cpe17g01088 Cpe-Chr17:8252826 3.11E-26 dispersed
Cpe17g01088 Cpe-Chr17:8252826 Cpe01g00595 Cpe-Chr1:3434320 9.06E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1241 Blo01g00195 . Bda03g00975 . Bpe04g00902 . . . Cmo08g00198 Cmo17g00588 . . . . . . . . . . . . . . Cla06g00088 Cam06g0132 . . Clacu06g0097 Cmu06g0095 Cre06g0866 . . Cone18ag0848 . . . . . . Blo07g00112 . . Bpe05g00975 . . Bma06g01437 . . . . Cma17g00607 Car08g00177 Car17g00573 . Cpe17g01088 . . . . . . . . . . . . . . . . . Cme11g02456
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe18g00943 CCT 1 384 Orphan Transcription Factor Family AT5G61850 67.2 5.4e-123 438.3
Cpe04g01641 CCT 1 382 Orphan Transcription Factor Family AT5G61850 67.2 2.2e-121 433.0
Cpe17g01088 . 102 262 Orphan Transcription Factor Family AT1G06040 69.0 7.9e-60 227.3
Cpe01g00595 CST 1 109 Orphan Transcription Factor Family AT1G06040 68.8 1.0e-38 157.1
Cpe14g00359 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50855 PF00643 zf-B_box 2.50E-08 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01088 Cpe_Chr17 FPKM 27.914581 29.887468 29.97163 31.902393 61.150303 65.403564 51.907101 44.055729 39.566872 42.894951