Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01088 CTCAAAATTCCTCAGCCACAAACCAATCCACCTCCACAGCCACACAAATGGCGTCCACCCTTTTCCGCCTCGTTGTCTCTTCCACCTTTCTTGCTTTCCATGTCCAAAAATCTAAACCCTTATCGTCTCACCCACCATTTACTCCCCCTTCCTTCTACCCCTTCTCTTCTACCTTTTTCTCCACTAACAATCGGTTTCCGTTCTTCTTCTGTTCGATCTTTTCCGGTCGGAGTTGCTGTTTTTCTCTCAAAATTTCATGGATTTGATGGTCTCGGAGTAGAAAAAAGGGCGGAGAGGGATAAGATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTTCCCAAATGCGACATATGCCAAGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCGTCTGACAAGCAGAAAGAAGATCTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCACTCACATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA 1017 46.71 LKIPQPQTNPPPQPHKWRPPFSASLSLPPFLLSMSKNLNPYRLTHHLLPLPSTPSLLPFSPLTIGFRSSSVRSFPVGVAVFLSKFHGFDGLGVEKRAERDKMKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGNALTYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8252826 8256144 + Cp4.1LG17g10890.1 Cpe17g01088 484406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01088 338 CDD Bbox1_BBX-like 157 199 - -
Cpe17g01088 338 PANTHER B-BOX ZINC FINGER PROTEIN 24 102 338 - -
Cpe17g01088 338 ProSiteProfiles Zinc finger B-box type profile. 153 200 IPR000315 GO:0008270
Cpe17g01088 338 Gene3D Classic Zinc Finger 101 200 - -
Cpe17g01088 338 Pfam B-box zinc finger 154 196 IPR000315 GO:0008270
Cpe17g01088 338 Pfam B-box zinc finger 104 145 IPR000315 GO:0008270
Cpe17g01088 338 ProSiteProfiles Zinc finger B-box type profile. 101 148 IPR000315 GO:0008270
Cpe17g01088 338 SMART bboxneu5 101 148 IPR000315 GO:0008270
Cpe17g01088 338 SMART bboxneu5 153 200 IPR000315 GO:0008270
Cpe17g01088 338 CDD Bbox1_BBX-like 106 148 - -
Cpe17g01088 338 PANTHER B-BOX ZINC FINGER PROTEIN 22 102 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00385 Cpe-Chr7:2483126 Cpe17g01088 Cpe-Chr17:8252826 7.82E-37 dispersed
Cpe10g00649 Cpe-Chr10:3738125 Cpe17g01088 Cpe-Chr17:8252826 7.88E-26 dispersed
Cpe14g00359 Cpe-Chr14:2185559 Cpe17g01088 Cpe-Chr17:8252826 1.60E-08 dispersed
Cpe15g00559 Cpe-Chr15:6419234 Cpe17g01088 Cpe-Chr17:8252826 1.21E-33 dispersed
Cpe16g00269 Cpe-Chr16:4700975 Cpe17g01088 Cpe-Chr17:8252826 8.70E-32 dispersed
Cpe19g00845 Cpe-Chr19:6255132 Cpe17g01088 Cpe-Chr17:8252826 3.11E-26 dispersed
Cpe17g01088 Cpe-Chr17:8252826 Cpe01g00595 Cpe-Chr1:3434320 9.06E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50855 PF00643 zf-B_box 2.50E-08 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01088 - - csv:101215327 446.047