Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g01088 | CTCAAAATTCCTCAGCCACAAACCAATCCACCTCCACAGCCACACAAATGGCGTCCACCCTTTTCCGCCTCGTTGTCTCTTCCACCTTTCTTGCTTTCCATGTCCAAAAATCTAAACCCTTATCGTCTCACCCACCATTTACTCCCCCTTCCTTCTACCCCTTCTCTTCTACCTTTTTCTCCACTAACAATCGGTTTCCGTTCTTCTTCTGTTCGATCTTTTCCGGTCGGAGTTGCTGTTTTTCTCTCAAAATTTCATGGATTTGATGGTCTCGGAGTAGAAAAAAGGGCGGAGAGGGATAAGATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTTCCCAAATGCGACATATGCCAAGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCGTCTGACAAGCAGAAAGAAGATCTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAATGCACTCACATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA | 1017 | 46.71 | LKIPQPQTNPPPQPHKWRPPFSASLSLPPFLLSMSKNLNPYRLTHHLLPLPSTPSLLPFSPLTIGFRSSSVRSFPVGVAVFLSKFHGFDGLGVEKRAERDKMKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGNALTYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8252826 | 8256144 | + | Cp4.1LG17g10890.1 | Cpe17g01088 | 484406 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g01088 | 338 | CDD | Bbox1_BBX-like | 157 | 199 | - | - | |
Cpe17g01088 | 338 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 102 | 338 | - | - | |
Cpe17g01088 | 338 | ProSiteProfiles | Zinc finger B-box type profile. | 153 | 200 | IPR000315 | GO:0008270 | |
Cpe17g01088 | 338 | Gene3D | Classic Zinc Finger | 101 | 200 | - | - | |
Cpe17g01088 | 338 | Pfam | B-box zinc finger | 154 | 196 | IPR000315 | GO:0008270 | |
Cpe17g01088 | 338 | Pfam | B-box zinc finger | 104 | 145 | IPR000315 | GO:0008270 | |
Cpe17g01088 | 338 | ProSiteProfiles | Zinc finger B-box type profile. | 101 | 148 | IPR000315 | GO:0008270 | |
Cpe17g01088 | 338 | SMART | bboxneu5 | 101 | 148 | IPR000315 | GO:0008270 | |
Cpe17g01088 | 338 | SMART | bboxneu5 | 153 | 200 | IPR000315 | GO:0008270 | |
Cpe17g01088 | 338 | CDD | Bbox1_BBX-like | 106 | 148 | - | - | |
Cpe17g01088 | 338 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 102 | 338 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00385 | Cpe-Chr7:2483126 | Cpe17g01088 | Cpe-Chr17:8252826 | 7.82E-37 | dispersed | |
Cpe10g00649 | Cpe-Chr10:3738125 | Cpe17g01088 | Cpe-Chr17:8252826 | 7.88E-26 | dispersed | |
Cpe14g00359 | Cpe-Chr14:2185559 | Cpe17g01088 | Cpe-Chr17:8252826 | 1.60E-08 | dispersed | |
Cpe15g00559 | Cpe-Chr15:6419234 | Cpe17g01088 | Cpe-Chr17:8252826 | 1.21E-33 | dispersed | |
Cpe16g00269 | Cpe-Chr16:4700975 | Cpe17g01088 | Cpe-Chr17:8252826 | 8.70E-32 | dispersed | |
Cpe19g00845 | Cpe-Chr19:6255132 | Cpe17g01088 | Cpe-Chr17:8252826 | 3.11E-26 | dispersed | |
Cpe17g01088 | Cpe-Chr17:8252826 | Cpe01g00595 | Cpe-Chr1:3434320 | 9.06E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50855 | PF00643 | zf-B_box | 2.50E-08 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g01088 | - | - | csv:101215327 | 446.047 |