Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01096 ATGTATCCAAAGCAAACTGGTTTAGGGGATGGACCAGTCTCCAGCCCACTACGAACAAGTGCTCGACCAAGAAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTCCTTCTGCATCTTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAATCCTTGCCAACTACGAATGCTGTCCCAGTTGAAAATTTGCGGCGTTCTCAACGACAGAAGAGGGGGCGTCCAAATTTTAGCCGTTACAGTGATTCTGAAGACGAGGACTTAATGAGTCCCAAGTATAAAACGTCGAGGAGTCGGAGGATTAGTAACTCAAATAAAAATGTTTTTTCTTCTCCAAAGCATACGAAAAACAAGGAGAACAGACCTACTCCTAGGCGTGAGGGATTACGACCACGTCATTCACGACTAATTTCTAGAGAGCGTTTGAATTCAGAATCAGATGATGAGCAAGGTAGCTCAGAAGATAAAGCGAGCCAAGATGAGATTGAAAATGGGAATGATATAGAGGATAATGATGTGGAAGATATTCAAAATGATGATGACGGTGATCCTGAACCTGAAGATGAGGGTGAGGAAGATGGTGATGATGAAGGAGGTGAAGAAGAACAGGAGGTACGAAGGCGATATGATCTTCGAAATCGTCCCGATGCTCGGAGACTCTCTATTGGAGAAGGGAAACCAAGACCAACATCTCCTCGTAGAGTGTTACATCAAGGAATGGGCACCAAGGTTGGGAGAGATGTAAGGAGGGGTGGATCGAGAGTTCATAAACGTCGTATGTCAAGGATTGAAGATTCTGACGATTCTCTTCTTGTGGATGAGCTGGATCAAGCTCCTGGTATACCATGGGCTCGAGGTGGAAGTAGATCTGGCCCACCTTGGCTGTTTGGAGGATTGGACATGCATGGGACTGCGTCTTGGGGATTGAATATTGCTGCATCTGGTTGGGGTCATCAAAGTGATGCATTTTCAAGTTTATCATCTGGTATTCAAACTGCTGGACCAAGCTCTAAAGGTGGGGCAGATATTCAACCTGTACAAGTTGATGAAAATGTTAGCTTTGATGACATTGGTGGCTTGTCAGGATATATTGATGCTTTGAAGGAGATGGTATTCTTTCCTTTACTCTACCCTGATTTCTTCGCAAGTTATCATATAACTCCACCGAGAGGGGTGCTGTTGTGTGGTCCTCCAGGCACTGGGAAAACATTAATTGCTAGAGCATTAGCATGTGCTGCATCTAAGGCCGGCCAAAAGGTCAGTTTCTACATGCGGAAGGGTGCTGATGTTCTAAGCAAGTGGGTTGGTGAGGCTGAGCGACAACTGAAACTACTTTTTGAAGAAGCACAGAGGAATCAACCTTCTATCATATTCTTTGATGAAATTGATGGGCTTGCTCCTGTTAGATCTAGCAAACAGGAGCAGATTCATAATTCCATCGTTTCCACTTTGCTTGCTTTGATGGATGGGTTAGACTCTCGTGGGCAGGTTGTATTAATTGGAGCTACTAATCGGATAGATGCTATCGATGGAGCCCTACGCCGCCCTGGTCGTTTTGATCGTGAATTTAACTTTCCACTGCCTGGTTGTGATGCGCGTGCTGAGATATTGGCCATTCACACGCGCAAGTGGAAGAATCCTCCTTCGGAGGAGCTTCGATCTGAACTTGCTGCTACTTGTGTAGGTTATTGTGGTGCTGATTTGAAGGCTCTCTGCACTGAAGCTGCTATTCAAGCTTTCCGCCAAAAGTATCCTCAGGTTTACACCAGCGATGACAAGTTTCTAATAGATGTTGAGTCAGTCAAGGTTGAAAAGTATCATTTTGTTGAAGCCATGTCCACAATCACTCCTGCTGCTCATCGAGGCGCCGTAGTGCATTCTCGGCCGCTGTCTTCTGTGGTTGCACCATGTTTGCAACGACACCTTCATAAAGCCATGAATATCCTATCTGATGCCTTTCCATTAGCAGCATCATCAGAGTTTGCCAAACTTTCCATGCTTTCTTTTGGATCTGCAATTCCGCTAGTTTTTAGACCTCGTCTTTTGCTTTGCGGTGGTGAAGGCGTTGGGTTGGATCACCTTGGTCCTGCAATTTTGCATGAATTGGAGAAATTCCCTGTTCATTCTTTGGGACTCCCGTCACTGCTTTCTGATCCTAGTGCAAAGACACCTGAGGAAGCGTTGGTACATATATTTGGTGAAGCAAGAAGGACTACTCCATCAATACTCTACCTACCTCAATTTCATTGTTGGTGGGAGACGGCAGATGAGCAATTGAGAGCTGTTTTATTGACTCTTTTAGAGGAGCTACCTTCTGACTTGCCCATATTACTGCTGGGAACATCTTTAGTTTCACTTGCTGAAGTTGATGAGAAAGCTTCTATGATTTTTCCTGATCGCGTAATCTATCAAGTCAGTCCTCCGTCCAGTGAAGATAAGTCTCTGTTTTTTACCCATTTAATTGAGGCTGCTTCCTCAGTTTTGCTGGAGGGCATGGAGAAAAAAGTGCAAGTGTCAGGATCCCTTCCTGAACTTCCCAAGGCTCCAGTAGTAGCCAGTGGACCAAAGGCTTCTGAGTTAAGGGCCAAGGTAGAAGCTGAACAGCATGCCCTTCGCCGATTACGCATGTGCCTTAGAGATGTTTGCAACAGGATTTTATATGATAAAAGGTTTACTGTCTTCCATTACCCTGTTCTGGATGAGGAAGCTCCCAATTACCGCTCAGTGGTCCAGAACCCAATGGACATGGCTACATTACTTCAACACGTTGACGCTGGGCAGTATATTACTTGTTCAGCATTTGTCCAAGATGTAGATCTTATTGTTTCTAATGCAAAGGCTTATAATGGAAATGACTACAATGGTGCTCGGATTGTTAGCAGAGCTTACGAGCTTCGAGATGCAGTGCATGGAATGCTGACGCAGATGGATCCGGCGCTGATTGCATTCTGTGACAAGATAGCTGCCCAAGGTGGTCCTCTGAACATGCCCGAAGAACTTGGTGGAACTATGTTTCCATCTACCCCAGTTGTGCAGCTGGGAACTGCTACTCGAGCTAGTGCTCGATTGCGTAATGTCCACCCAGACCTTGATTTCAATCGAAGTTATGAGGCATTAAAACGCCCAAAGAAGAATGTGGATGCTGCTCATCATGCAGCTTTACAAACAGAAGAGAAGCCACCACTACGTCAAGATTCAGTTGCGCCAAAGCCATCTCCCGATATCGAAATGAACGAAGTGAGTCTTGAAAGTTCAAAAATCTGTCCGGATGGTGGGAATCAGTGTGAAGGTTCTGGTAGAGAGGTCCCTGATTTCACAGATTGGAATGGTTCACAAGATGCTGCTGGGGTATCGGATGGGTATATCGCGAGGCAAGTCGAGTCGGTGAAGAACGTGCTTGTGGAGCGGAGTGGGAAGTATGGAATTCCACAGCTTGAAAGACTGTATACTCGGATAATGAAAGCTGTGTTCAAGATTAAAGATAAAGAAGAAGAAGGCATGGATGATCCGAAGCATTCAATTTTGAAGTTTTTATTGAAATTTGCAGAGGATGAATCTAATTTCTGA 3606 45.04 MYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGPSASFKPNKKRTPATRIAKMLRPKKQSLPTTNAVPVENLRRSQRQKRGRPNFSRYSDSEDEDLMSPKYKTSRSRRISNSNKNVFSSPKHTKNKENRPTPRREGLRPRHSRLISRERLNSESDDEQGSSEDKASQDEIENGNDIEDNDVEDIQNDDDGDPEPEDEGEEDGDDEGGEEEQEVRRRYDLRNRPDARRLSIGEGKPRPTSPRRVLHQGMGTKVGRDVRRGGSRVHKRRMSRIEDSDDSLLVDELDQAPGIPWARGGSRSGPPWLFGGLDMHGTASWGLNIAASGWGHQSDAFSSLSSGIQTAGPSSKGGADIQPVQVDENVSFDDIGGLSGYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILAIHTRKWKNPPSEELRSELAATCVGYCGADLKALCTEAAIQAFRQKYPQVYTSDDKFLIDVESVKVEKYHFVEAMSTITPAAHRGAVVHSRPLSSVVAPCLQRHLHKAMNILSDAFPLAASSEFAKLSMLSFGSAIPLVFRPRLLLCGGEGVGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHCWWETADEQLRAVLLTLLEELPSDLPILLLGTSLVSLAEVDEKASMIFPDRVIYQVSPPSSEDKSLFFTHLIEAASSVLLEGMEKKVQVSGSLPELPKAPVVASGPKASELRAKVEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVLDEEAPNYRSVVQNPMDMATLLQHVDAGQYITCSAFVQDVDLIVSNAKAYNGNDYNGARIVSRAYELRDAVHGMLTQMDPALIAFCDKIAAQGGPLNMPEELGGTMFPSTPVVQLGTATRASARLRNVHPDLDFNRSYEALKRPKKNVDAAHHAALQTEEKPPLRQDSVAPKPSPDIEMNEVSLESSKICPDGGNQCEGSGREVPDFTDWNGSQDAAGVSDGYIARQVESVKNVLVERSGKYGIPQLERLYTRIMKAVFKIKDKEEEGMDDPKHSILKFLLKFAEDESNF 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8317677 8326868 + Cp4.1LG17g10900.1 Cpe17g01096 484414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 177 213 - -
Cpe17g01096 1201 Pfam ATPase family associated with various cellular activities (AAA) 405 540 IPR003959 GO:0005524|GO:0016887
Cpe17g01096 1201 PANTHER AAA DOMAIN-CONTAINING 1 1196 IPR045199 -
Cpe17g01096 1201 Pfam Bromodomain 898 965 IPR001487 GO:0005515
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 108 124 - -
Cpe17g01096 1201 Gene3D - 541 626 - -
Cpe17g01096 1201 PANTHER BNAC08G44480D PROTEIN 1 1196 - -
Cpe17g01096 1201 SMART AAA_5 401 542 IPR003593 -
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 1056 1071 - -
Cpe17g01096 1201 CDD Bromo_AAA 884 994 - -
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 63 77 - -
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 214 236 - -
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 1056 1087 - -
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 125 176 - -
Cpe17g01096 1201 SUPERFAMILY Bromodomain 867 993 IPR036427 GO:0005515
Cpe17g01096 1201 ProSiteProfiles Bromodomain profile. 907 969 IPR001487 GO:0005515
Cpe17g01096 1201 CDD AAA 401 540 - -
Cpe17g01096 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 628 IPR027417 -
Cpe17g01096 1201 Gene3D - 876 1004 IPR036427 GO:0005515
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 1 275 - -
Cpe17g01096 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 837 IPR027417 -
Cpe17g01096 1201 ProSitePatterns AAA-protein family signature. 510 528 IPR003960 GO:0005524|GO:0016887
Cpe17g01096 1201 MobiDBLite consensus disorder prediction 78 107 - -
Cpe17g01096 1201 Pfam AAA+ lid domain 567 604 IPR041569 -
Cpe17g01096 1201 PRINTS Bromodomain signature 916 932 IPR001487 GO:0005515
Cpe17g01096 1201 PRINTS Bromodomain signature 932 950 IPR001487 GO:0005515
Cpe17g01096 1201 PRINTS Bromodomain signature 950 969 IPR001487 GO:0005515
Cpe17g01096 1201 Gene3D - 363 633 IPR027417 -
Cpe17g01096 1201 SMART bromo_6 884 991 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01096 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - csv:101203476 2006.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00341 Cpe-Chr14:2076510 Cpe17g01096 Cpe-Chr17:8317677 3.51E-81 dispersed
Cpe17g01096 Cpe-Chr17:8317677 Cpe10g00233 Cpe-Chr10:1359701 1.15E-41 dispersed
Cpe17g01096 Cpe-Chr17:8317677 Cpe08g01089 Cpe-Chr8:8262831 1.83E-41 transposed
Cpe17g01096 Cpe-Chr17:8317677 Cpe03g00187 Cpe-Chr3:928604 3.29E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01096 Cpe_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0