Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01099 ATGGATTCTGAGGATGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGCGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCAAAATTTTACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTGGCTTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCGAGTACGGAAGCTAGTTGGCTTGTTGGAAGAACCTGTTGTACATGCCTCAAATGCTAGAGAAGTAGGAAATGTAGATATTTACATCTTCATCTTTAACTTGGCTTCTTATGAAATATGTGTTGGTGTTTTTGATTGCATATTACTTGGAAAACATCTTGATGATTGCTTTTGCTGGCAGCATACATGTGGAATCTGTTTTGAGTCCCATCCTGCAAGTAGTATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGCGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTGAAGACATGGTTAATTCATTGGCCTCAAATGAAGACAGAGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCTTCTGTTCATATGGCTTTTGCTGGAATTGCACCGAAGAAGCTCACCGTCCTGTTGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTACAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCATATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGTTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAAAGCAGGGAGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCAGTTCGACCAGAAGCGACGACAATGCAACTCACTGGTCGTGTGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA 1878 43.93 MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREQNFTILNEFDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKLVGLLEEPVVHASNAREVGNVDIYIFIFNLASYEICVGVFDCILLGKHLDDCFCWQHTCGICFESHPASSIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGEDMVNSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALTDLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSKAGRSGRAKGGIIRTSSSTRSDDNATHWSCEHCTYVNARSATICEMCHQRH 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8344123 8350900 - Cp4.1LG17g11070.1 Cpe17g01099 484417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01099 625 ProSiteProfiles Zinc finger RING-type profile. 174 221 IPR001841 -
Cpe17g01099 625 SMART ibrneu5 243 305 IPR002867 -
Cpe17g01099 625 SMART ibrneu5 309 379 IPR002867 -
Cpe17g01099 625 ProSiteProfiles TRIAD supradomain profile. 170 383 IPR044066 -
Cpe17g01099 625 SUPERFAMILY RING/U-box 243 312 - -
Cpe17g01099 625 Coils Coil 391 411 - -
Cpe17g01099 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 134 - -
Cpe17g01099 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 257 IPR013083 -
Cpe17g01099 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 172 573 IPR031127 GO:0004842|GO:0016567
Cpe17g01099 625 CDD RING-HC_RBR_TRIAD1_like 174 224 - -
Cpe17g01099 625 MobiDBLite consensus disorder prediction 556 599 - -
Cpe17g01099 625 MobiDBLite consensus disorder prediction 585 599 - -
Cpe17g01099 625 SMART zf_4 600 624 IPR001876 -
Cpe17g01099 625 Gene3D - 595 625 - -
Cpe17g01099 625 Pfam IBR domain, a half RING-finger domain 322 370 IPR002867 -
Cpe17g01099 625 Pfam IBR domain, a half RING-finger domain 243 305 IPR002867 -
Cpe17g01099 625 SUPERFAMILY RING/U-box 172 252 - -
Cpe17g01099 625 SUPERFAMILY Ran binding protein zinc finger-like 597 623 IPR036443 -
Cpe17g01099 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 134 IPR031127 GO:0004842|GO:0016567
Cpe17g01099 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 172 573 - -
Cpe17g01099 625 MobiDBLite consensus disorder prediction 556 576 - -
Cpe17g01099 625 Pfam Ariadne domain 392 557 IPR045840 -
Cpe17g01099 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Cpe17g01099 625 Gene3D - 301 556 - -
Cpe17g01099 625 SUPERFAMILY RING/U-box 324 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01099 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1068.53
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe12g00507 Cpe17g01099 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00224 Cpe-Chr16:4384069 Cpe17g01099 Cpe-Chr17:8344123 5.76E-56 dispersed
Cpe17g01099 Cpe-Chr17:8344123 Cpe01g00768 Cpe-Chr1:4484246 5.10E-11 dispersed
Cpe07g00830 Cpe-Chr7:7499261 Cpe17g01099 Cpe-Chr17:8344123 0 transposed
Cpe15g00198 Cpe-Chr15:1638593 Cpe17g01099 Cpe-Chr17:8344123 1.35E-14 transposed
Cpe12g00507 Cpe-Chr12:4972647 Cpe17g01099 Cpe-Chr17:8344123 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01240 . 215 641 ARIADNE family AT4G34370 71.3 2.3e-182 635.6
Cpe16g00224 . 164 589 ARIADNE family AT4G34370 71.8 3.3e-181 631.7
Cpe05g01240 . 109 578 ARIADNE family AT2G16090 78.4 1.6e-224 775.8
Cpe16g00224 . 58 542 ARIADNE family AT2G16090 76.8 6.8e-223 770.4
Cpe16g00224 . 38 543 ARIADNE family AT3G27710 61.8 9.0e-184 640.6
Cpe05g01240 . 87 573 ARIADNE family AT3G27710 62.4 5.8e-183 637.9
Cpe05g01240 . 98 573 ARIADNE family AT3G27720 54.4 6.4e-144 508.1
Cpe16g00224 . 44 522 ARIADNE family AT3G27720 53.6 6.0e-142 501.5
Cpe07g00830 . 26 565 ARIADNE family AT1G05890 62.9 3.1e-217 751.9
Cpe17g01099 CST 56 563 ARIADNE family AT1G05890 68.1 3.3e-211 731.9
Cpe12g00507 CST 117 540 ARIADNE family AT1G05890 60.2 1.2e-160 563.9
Cpe07g00830 . 26 620 ARIADNE family AT1G65430 71.5 7.6e-258 886.7
Cpe17g01099 CST 16 622 ARIADNE family AT1G65430 65.4 7.9e-239 823.5
Cpe12g00507 CST 72 595 ARIADNE family AT1G65430 57.8 3.9e-185 645.2
Cpe07g00830 . 24 461 ARIADNE family AT2G31780 55.3 2.9e-148 522.3
Cpe17g01099 CST 53 488 ARIADNE family AT2G31780 53.3 3.9e-140 495.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe17g01099 Cpe_Chr17 FPKM 25.203934 29.13312 24.879875 24.138468 16.727648 16.582775 17.195723 26.082716 22.629761 24.709635