Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01099 ATGGATTCTGAGGATGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGCGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCAAAATTTTACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTGGCTTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCGAGTACGGAAGCTAGTTGGCTTGTTGGAAGAACCTGTTGTACATGCCTCAAATGCTAGAGAAGTAGGAAATGTAGATATTTACATCTTCATCTTTAACTTGGCTTCTTATGAAATATGTGTTGGTGTTTTTGATTGCATATTACTTGGAAAACATCTTGATGATTGCTTTTGCTGGCAGCATACATGTGGAATCTGTTTTGAGTCCCATCCTGCAAGTAGTATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGCGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTGAAGACATGGTTAATTCATTGGCCTCAAATGAAGACAGAGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCTTCTGTTCATATGGCTTTTGCTGGAATTGCACCGAAGAAGCTCACCGTCCTGTTGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTACAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCATATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGTTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAAAGCAGGGAGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCAGTTCGACCAGAAGCGACGACAATGCAACTCACTGGTCGTGTGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA 1878 43.93 MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREQNFTILNEFDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKLVGLLEEPVVHASNAREVGNVDIYIFIFNLASYEICVGVFDCILLGKHLDDCFCWQHTCGICFESHPASSIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGEDMVNSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALTDLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSKAGRSGRAKGGIIRTSSSTRSDDNATHWSCEHCTYVNARSATICEMCHQRH 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8344123 8350900 - Cp4.1LG17g11070.1 Cpe17g01099 484417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01099 625 ProSiteProfiles Zinc finger RING-type profile. 174 221 IPR001841 -
Cpe17g01099 625 SMART ibrneu5 243 305 IPR002867 -
Cpe17g01099 625 SMART ibrneu5 309 379 IPR002867 -
Cpe17g01099 625 ProSiteProfiles TRIAD supradomain profile. 170 383 IPR044066 -
Cpe17g01099 625 SUPERFAMILY RING/U-box 243 312 - -
Cpe17g01099 625 Coils Coil 391 411 - -
Cpe17g01099 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 22 134 - -
Cpe17g01099 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 257 IPR013083 -
Cpe17g01099 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 172 573 IPR031127 GO:0004842|GO:0016567
Cpe17g01099 625 CDD RING-HC_RBR_TRIAD1_like 174 224 - -
Cpe17g01099 625 MobiDBLite consensus disorder prediction 556 599 - -
Cpe17g01099 625 MobiDBLite consensus disorder prediction 585 599 - -
Cpe17g01099 625 SMART zf_4 600 624 IPR001876 -
Cpe17g01099 625 Gene3D - 595 625 - -
Cpe17g01099 625 Pfam IBR domain, a half RING-finger domain 322 370 IPR002867 -
Cpe17g01099 625 Pfam IBR domain, a half RING-finger domain 243 305 IPR002867 -
Cpe17g01099 625 SUPERFAMILY RING/U-box 172 252 - -
Cpe17g01099 625 SUPERFAMILY Ran binding protein zinc finger-like 597 623 IPR036443 -
Cpe17g01099 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 134 IPR031127 GO:0004842|GO:0016567
Cpe17g01099 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 172 573 - -
Cpe17g01099 625 MobiDBLite consensus disorder prediction 556 576 - -
Cpe17g01099 625 Pfam Ariadne domain 392 557 IPR045840 -
Cpe17g01099 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Cpe17g01099 625 Gene3D - 301 556 - -
Cpe17g01099 625 SUPERFAMILY RING/U-box 324 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00507 Cpe17g01099 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00224 Cpe-Chr16:4384069 Cpe17g01099 Cpe-Chr17:8344123 5.76E-56 dispersed
Cpe17g01099 Cpe-Chr17:8344123 Cpe01g00768 Cpe-Chr1:4484246 5.10E-11 dispersed
Cpe07g00830 Cpe-Chr7:7499261 Cpe17g01099 Cpe-Chr17:8344123 0 transposed
Cpe15g00198 Cpe-Chr15:1638593 Cpe17g01099 Cpe-Chr17:8344123 1.35E-14 transposed
Cpe12g00507 Cpe-Chr12:4972647 Cpe17g01099 Cpe-Chr17:8344123 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01099 K11968 - csv:101223037 1068.53