Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g01099 | ATGGATTCTGAGGATGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGCGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCAAAATTTTACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTGGCTTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAACTCGAGTACGGAAGCTAGTTGGCTTGTTGGAAGAACCTGTTGTACATGCCTCAAATGCTAGAGAAGTAGGAAATGTAGATATTTACATCTTCATCTTTAACTTGGCTTCTTATGAAATATGTGTTGGTGTTTTTGATTGCATATTACTTGGAAAACATCTTGATGATTGCTTTTGCTGGCAGCATACATGTGGAATCTGTTTTGAGTCCCATCCTGCAAGTAGTATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGCGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTGAAGACATGGTTAATTCATTGGCCTCAAATGAAGACAGAGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCTTCTGTTCATATGGCTTTTGCTGGAATTGCACCGAAGAAGCTCACCGTCCTGTTGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTACAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCATATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGTTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAAAGCAGGGAGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCAGTTCGACCAGAAGCGACGACAATGCAACTCACTGGTCGTGTGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA | 1878 | 43.93 | MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREQNFTILNEFDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKLVGLLEEPVVHASNAREVGNVDIYIFIFNLASYEICVGVFDCILLGKHLDDCFCWQHTCGICFESHPASSIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGEDMVNSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALTDLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSKAGRSGRAKGGIIRTSSSTRSDDNATHWSCEHCTYVNARSATICEMCHQRH | 625 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8344123 | 8350900 | - | Cp4.1LG17g11070.1 | Cpe17g01099 | 484417 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g01099 | 625 | ProSiteProfiles | Zinc finger RING-type profile. | 174 | 221 | IPR001841 | - | |
Cpe17g01099 | 625 | SMART | ibrneu5 | 243 | 305 | IPR002867 | - | |
Cpe17g01099 | 625 | SMART | ibrneu5 | 309 | 379 | IPR002867 | - | |
Cpe17g01099 | 625 | ProSiteProfiles | TRIAD supradomain profile. | 170 | 383 | IPR044066 | - | |
Cpe17g01099 | 625 | SUPERFAMILY | RING/U-box | 243 | 312 | - | - | |
Cpe17g01099 | 625 | Coils | Coil | 391 | 411 | - | - | |
Cpe17g01099 | 625 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 22 | 134 | - | - | |
Cpe17g01099 | 625 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 257 | IPR013083 | - | |
Cpe17g01099 | 625 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 172 | 573 | IPR031127 | GO:0004842|GO:0016567 | |
Cpe17g01099 | 625 | CDD | RING-HC_RBR_TRIAD1_like | 174 | 224 | - | - | |
Cpe17g01099 | 625 | MobiDBLite | consensus disorder prediction | 556 | 599 | - | - | |
Cpe17g01099 | 625 | MobiDBLite | consensus disorder prediction | 585 | 599 | - | - | |
Cpe17g01099 | 625 | SMART | zf_4 | 600 | 624 | IPR001876 | - | |
Cpe17g01099 | 625 | Gene3D | - | 595 | 625 | - | - | |
Cpe17g01099 | 625 | Pfam | IBR domain, a half RING-finger domain | 322 | 370 | IPR002867 | - | |
Cpe17g01099 | 625 | Pfam | IBR domain, a half RING-finger domain | 243 | 305 | IPR002867 | - | |
Cpe17g01099 | 625 | SUPERFAMILY | RING/U-box | 172 | 252 | - | - | |
Cpe17g01099 | 625 | SUPERFAMILY | Ran binding protein zinc finger-like | 597 | 623 | IPR036443 | - | |
Cpe17g01099 | 625 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 22 | 134 | IPR031127 | GO:0004842|GO:0016567 | |
Cpe17g01099 | 625 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 172 | 573 | - | - | |
Cpe17g01099 | 625 | MobiDBLite | consensus disorder prediction | 556 | 576 | - | - | |
Cpe17g01099 | 625 | Pfam | Ariadne domain | 392 | 557 | IPR045840 | - | |
Cpe17g01099 | 625 | ProSitePatterns | Zinc finger RanBP2-type signature. | 602 | 621 | IPR001876 | - | |
Cpe17g01099 | 625 | Gene3D | - | 301 | 556 | - | - | |
Cpe17g01099 | 625 | SUPERFAMILY | RING/U-box | 324 | 372 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe12g00507 | Cpe17g01099 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe16g00224 | Cpe-Chr16:4384069 | Cpe17g01099 | Cpe-Chr17:8344123 | 5.76E-56 | dispersed | |
Cpe17g01099 | Cpe-Chr17:8344123 | Cpe01g00768 | Cpe-Chr1:4484246 | 5.10E-11 | dispersed | |
Cpe07g00830 | Cpe-Chr7:7499261 | Cpe17g01099 | Cpe-Chr17:8344123 | 0 | transposed | |
Cpe15g00198 | Cpe-Chr15:1638593 | Cpe17g01099 | Cpe-Chr17:8344123 | 1.35E-14 | transposed | |
Cpe12g00507 | Cpe-Chr12:4972647 | Cpe17g01099 | Cpe-Chr17:8344123 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g01099 | K11968 | - | csv:101223037 | 1068.53 |