Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01101 TTCCTAAGCTTATCTTGCGGAGGAACTACCACCTTCACTGACTCCTCCAACATTTCATGGATTCCGGACATCGACTACATCGGCACCGGTAACATGTCAATCATCGACAAAGGCAAGGGTGGATCTTTTTCCACCGGCCATGTTCGGTTCTTCCCCGACACCCGAGCGCGAAAATGTTACAAGCTACCATTGAAAAATGGCTCCTCATCAGTTCTTATCAGAGCTCAGTTTGTATACAAAAACTATGACAAGCTTGGAAAGCCCCCTGCCTTTGCTGTTTCTATTGGGACAGCCATAGCTACCAATGTGAACCTTACCTCTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAAGAAACTGTCTCCTTCTGTTTGCATTCCATTCCTGAGGGTGGAAGTCCCTTGATATCTTCGCTCGAACTCCGACCGCTGCCACGGGGAGCGTACGACGATGGCTTGCTTCCTAATCAAGCTCTTAGAAAGTCGTACCGAATCAATTGTGGTTACACTAATGGATCTCTCAGGTACCCAATCGATCGATACGATCGAATCTGGGACGCGGACGAGAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCTAACTTTGATTCTATACAAGTGAAGGAAGCTCCACCAGCTGTAGTGGTTGAAACAGCTAGAGTTTTGGCAAGAAGAGATGAGCTGAGCTACAACCTCCCACTTGAAGAACAAGGAGATTACTTTGTGATATTGTATTTTGGTGGGATTCTTGCAGTTCATCCTTCATTTGATGTGTTGATGAATGGGAAAGTTATAGAATCAAATTACACTGTTGAAATGGGAGAGATGAGGGCTTTGTATGTCATTCAAGAGCAAATCAAGAGCTTGATTATCACTTTCAAGAGTGTTAAATTCTATCCTCAAGTCAATGCCATTGAGGTGTATCAAATTGTTCATGTTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAGGTGATTCATCAATCTATTGGTTTGAATTTGGGATGGGAAGATGATCCATGCTCTCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTCACATCTCTGGAGCTTTCCGATATCAACTTCAGGTCGATCAGCCCGACGTTCGGCGACATTCTCGATCTCAAAATACTGGATTTGCACAACACTTCACTTACCGGGCAGATAGAAAACTTGGGCAGCCTGACACATCTTGAAAATTTGAACTTGAGTTTCAACAAGCTAACGTCATTTGGGACAGATTTCGAGAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCACTTATTGAATTTGGAGAACAATAGGCTAGAAGGAACCCTTCCATTGGCTTTGAATAAAGGAACTCTGGAAATTAGAACATCAGGAAACCCTTGTCTGTCTTTCTCCACAATGACATGCAATGATGTTTCATCAAACCCAGCCATTGAAACACCACAAGTCACAGTGGTTCCTGACAGAAAGAAGGACATGAGCAGCCACAATAGCAACAGTCATATGCCAATCACTGTCATTGCTTGTGCAGTTGCAGCAGTTTTGCTAGTCCTCATCACACTCTCTCTTTCATTTCTACTCTACATGAGGAAGCATTCTCAACACACAGCTCAACCCACATACTCAACAAAGGCAGCAATGGAGCTAAGGAATTGGAACGCTGCAAAAGTATTCTCTTACAAAGAGATAAAGGCAGCTACAAACAACTTCAAGGAGGTGATTGGCAGAGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCCTGAGGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAAGCCAACTTGGGGCTGATTCCTTTATCAATGAGGTTCATCTCCTGTCTCAAATTCGTCATCAAAATCTCGTTTGTTTGGAAGGATTTTGTAACGAATCGAAACGACAAATACTTGTTTACGAGTATCTACCGGGTGGATCCTTGGCTGATCACATCTATGGCAAGAACAAAAAAAGTGTCTCACTTAGCTGGATTAGAAGACTCAAAGTAGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGAAGTGAACCAAGGATAATCCACCGTGATGTTAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGGCTGTCCAAGCAACTACCACAGCCTGATGCTACTCATGTCACCACTGTTGTCAAGGGCACAGCTGGCTATTTGGATCCCGAGTATTACTCGACTCAACAGTTAACCGAAAAGAGCGATGTTTATAGTTTTGGAGTGGTTCTATTAGAGCTCATTTGTGGACGAGAGCCTCTGAGTCACACTGGAACTCCGGATTCTTTCAACTTGGTGTTATGGGCGAAACCGTACTTGCAAGCGGGTGCGTTCGAGATAGTCGATGAGAGGTTGAGGGGAAGGTTTGATGTTGAAAGCATGAAAAAGGCAGCTGTTATTGCTATAAGGTGTGTAGAGAGAGATGCTTCACTAAGGCCTAATATTGGACAAGTCTTGGATGACCTCAAACAAGCTTATGATGCTCAAATTGCTTATCTGTCTACTTTTGGCCTTTAA 2655 43.31 FLSLSCGGTTTFTDSSNISWIPDIDYIGTGNMSIIDKGKGGSFSTGHVRFFPDTRARKCYKLPLKNGSSSVLIRAQFVYKNYDKLGKPPAFAVSIGTAIATNVNLTSHDPWTEEFVWPVNKETVSFCLHSIPEGGSPLISSLELRPLPRGAYDDGLLPNQALRKSYRINCGYTNGSLRYPIDRYDRIWDADENFKPFHVSSGFKVEANFDSIQVKEAPPAVVVETARVLARRDELSYNLPLEEQGDYFVILYFGGILAVHPSFDVLMNGKVIESNYTVEMGEMRALYVIQEQIKSLIITFKSVKFYPQVNAIEVYQIVHVPLEASSTTVSALQVIHQSIGLNLGWEDDPCSPRTWDHVGCEGNLVTSLELSDINFRSISPTFGDILDLKILDLHNTSLTGQIENLGSLTHLENLNLSFNKLTSFGTDFENLSNLKILDLQNNSLQGIVPDSLGELEDLHLLNLENNRLEGTLPLALNKGTLEIRTSGNPCLSFSTMTCNDVSSNPAIETPQVTVVPDRKKDMSSHNSNSHMPITVIACAVAAVLLVLITLSLSFLLYMRKHSQHTAQPTYSTKAAMELRNWNAAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPEGKLVAVKVRFDKSQLGADSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGKNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQLPQPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGTPDSFNLVLWAKPYLQAGAFEIVDERLRGRFDVESMKKAAVIAIRCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8356990 8364089 + Cp4.1LG17g11010.1 Cpe17g01101 484419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01101 884 ProSiteProfiles Leucine-rich repeat profile. 410 432 IPR001611 GO:0005515
Cpe17g01101 884 PANTHER OS07G0107800 PROTEIN-RELATED 1 883 - -
Cpe17g01101 884 Gene3D Phosphorylase Kinase; domain 1 570 672 - -
Cpe17g01101 884 SMART serkin_6 597 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g01101 884 ProSiteProfiles Protein kinase domain profile. 597 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g01101 884 Pfam Malectin-like domain 4 317 IPR024788 -
Cpe17g01101 884 Gene3D Transferase(Phosphotransferase) domain 1 673 879 - -
Cpe17g01101 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Cpe17g01101 884 Gene3D - 163 318 - -
Cpe17g01101 884 SUPERFAMILY L domain-like 345 477 - -
Cpe17g01101 884 SMART LRR_typ_2 408 430 IPR003591 -
Cpe17g01101 884 SMART LRR_typ_2 455 479 IPR003591 -
Cpe17g01101 884 SMART LRR_typ_2 431 454 IPR003591 -
Cpe17g01101 884 CDD STKc_IRAK 603 870 - -
Cpe17g01101 884 Gene3D Ribonuclease Inhibitor 329 522 IPR032675 -
Cpe17g01101 884 Pfam Protein kinase domain 600 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g01101 884 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 883 - -
Cpe17g01101 884 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Cpe17g01101 884 Pfam Leucine rich repeat 410 468 IPR001611 GO:0005515
Cpe17g01101 884 SUPERFAMILY Protein kinase-like (PK-like) 572 868 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00216 Cpe-Chr1:1214418 Cpe17g01101 Cpe-Chr17:8356990 1.36E-20 dispersed
Cpe01g00438 Cpe-Chr1:2522297 Cpe17g01101 Cpe-Chr17:8356990 5.94E-40 dispersed
Cpe09g00415 Cpe-Chr9:2600558 Cpe17g01101 Cpe-Chr17:8356990 1.08E-33 dispersed
Cpe17g01101 Cpe-Chr17:8356990 Cpe03g01085 Cpe-Chr3:8964791 1.50E-114 dispersed
Cpe17g01101 Cpe-Chr17:8356990 Cpe03g00155 Cpe-Chr3:780043 2.36E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62968 PF12819 Malectin_like 7.00E-53 CL0202 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01101 - - csv:101203637 1506.89