Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01122 ATGATCGATGATGATGTGAAGAAAGATCATTACTCTGAGCAGATTCCTGATTTGGATTTTCAGAAATTGGAAGTCGTAACGGCGCTCGGTCGAGGAGCGAAAGGAGTTGTGTTCTTGGCTCGAAATGCGAACGATGACGACGGCGATGGCGAATGGCTGGCGTTGAAGGTGATATCTAGAGATTTGATCGAGAGGAAGGCCAAGATTGTGAATAGCGATGCCGATGAGTATCGCAGAGTTTGCTTTGAACGAGAAGTTTTACGTCAGTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGGATACGAAGAAAGTTGTTGGTTACGCCATTGATTATTGCAATGGACGTGATCTTAATACTCTCAGGAAGAAACAGACCGAGAAAATGTTCTCCGATGACGTTATTAGATTTTACGCGGCGGAATTAGTTATGGCGTTGGAGTATGTACACAGCCTAGGAATAGTTTACAGAGATTTAAAGCCGGACAACGTTATGGTTCAACATAACGGCCACATAATGCTTGTAGATTTTGATCTGTCTACGAGGCTCTCTCAGAAATCCCCTAAATCGTCTCCGTTATTGTTGCCGGCGGTGGAGGTTTTGAAGGAATCTAGATCGACGATTAAGAAAAAAAGCAAGAAGAAAAGATTCTTTCATTTTCACCGATTCTGCAACTCCGGCGTGTCGCCGGAAGATTCAGACCAACAGACGGCCAATAAGCCAAAATCTCCGCCAGAGAAGCGAAGATCGCCGCCAGATTCGTCGGAATCCGACTCATCGGAGAAGTCGAACTCATTCGTCGGAACAGAGGAGTACGTGGCTCCGGAGATAGTCTCCGGGAAGGGGCATGACTTCTCCGTGGACTGGTGGTCGCTCGGAGTAGTTCTGTACGAGATGCTATACGGAACGACGCCGTTTAGAGGATCGAATCGGAAAGAAACATTCTACCGGATACTGACAAAGACGCCGGATCTCAGCGGCGAAGTGACACCGTTAAGGGATTTGATAAGGAAATTGCTGGAGAAAGATCCAACGAAGAGGATCGAACTGGAGGAAATCAAGAGCCACAATTTCTTTAAAGGAACAGACTGGGATTTGGTCCTGGAAATTCCCCGGCCGCCGTCACTGCCGGCAATAGCGACGGAGGACACAGATGGAAATAACTTAATAGATGTTGAGTCTTTCGTCCAAGATATATTTTGCAACGAAACGGAGAAGAAGAATCGTCCGAACGGCGATGAAGGGAACGGGTTTATTCCTACTAATTACACCGAGTCTGACAGATTTCATGTATTCTGA 1305 46.59 MIDDDVKKDHYSEQIPDLDFQKLEVVTALGRGAKGVVFLARNANDDDGDGEWLALKVISRDLIERKAKIVNSDADEYRRVCFEREVLRQFRHPLLPRLRGVLDTKKVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPDNVMVQHNGHIMLVDFDLSTRLSQKSPKSSPLLLPAVEVLKESRSTIKKKSKKKRFFHFHRFCNSGVSPEDSDQQTANKPKSPPEKRRSPPDSSESDSSEKSNSFVGTEEYVAPEIVSGKGHDFSVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKTPDLSGEVTPLRDLIRKLLEKDPTKRIELEEIKSHNFFKGTDWDLVLEIPRPPSLPAIATEDTDGNNLIDVESFVQDIFCNETEKKNRPNGDEGNGFIPTNYTESDRFHVF 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8500899 8502574 - Cp4.1LG17g11200.1 Cpe17g01122 484440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01122 434 SUPERFAMILY Protein kinase-like (PK-like) 22 396 IPR011009 -
Cpe17g01122 434 MobiDBLite consensus disorder prediction 243 258 - -
Cpe17g01122 434 SMART serkin_6 23 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g01122 434 Pfam Protein kinase domain 24 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g01122 434 Pfam Protein kinase domain 259 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g01122 434 Gene3D Transferase(Phosphotransferase) domain 1 119 189 - -
Cpe17g01122 434 Gene3D Transferase(Phosphotransferase) domain 1 258 380 - -
Cpe17g01122 434 PANTHER FLIPPASE KINASE 1-RELATED 12 407 - -
Cpe17g01122 434 Gene3D Phosphorylase Kinase; domain 1 23 118 - -
Cpe17g01122 434 ProSiteProfiles Protein kinase domain profile. 23 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g01122 434 PANTHER RHO-ASSOCIATED PROTEIN KINASE 1/2-RELATED 12 407 - -
Cpe17g01122 434 MobiDBLite consensus disorder prediction 229 268 - -
Cpe17g01122 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00507 Cpe-Chr5:3007967 Cpe17g01122 Cpe-Chr17:8500899 3.28E-86 dispersed
Cpe17g01122 Cpe-Chr17:8500899 Cpe10g00271 Cpe-Chr10:1615268 3.70E-71 dispersed
Cpe17g01122 Cpe-Chr17:8500899 Cpe16g00891 Cpe-Chr16:8376300 5.35E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62969 PF00069 Pkinase 8.10E-30 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01122 K20714 - csv:101223223 612.068