Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01125 ATGGAGAACGAATTCTTCCTCAATGCTACTGAAATCCCTCAATCTCTTATGCATTTCGACTCCAATCCTTCCATGGCGACCTGGAACCACTCCTTTTCGTCCGCCATGGATGTTCAACCTCAACAACTTCAGCTTCATGTTCCTGAGTTCAATAATCACTGTTCTTCCTCTCATCCTTCGCCTCCGGATTGCTATCTCAATCCAGTTCCTCAACAGAGCTTCCAATTCGATTCCGCTCTGAGTTCCATGGTTTCTTCTCCAGCGCCCTCCAATTCCAACCCTACCAACGATAGCTTTGTGATCAGAGAACTGATCGGAAAATTAGGCGCAAATTCCGGGAGGAGAATCTCGGAATTGAACTCTTCTTCTTCTTCTTCCAGTGTGGCGGAGTTTTCGTCCGATCCTGGATTTGCTGAGCGTGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGACGTCAGTTGACGAATGAATTCGGTAATTTCAGATCTCACCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAAGCCCTCGGATCTGAAACGAAGTTGCAAGAACAGAAGAACAATTCCTCGTCGCAAGAAGACGAATCGTCTCTCTCAAATCCGGATAAGGCGATTTCGAATCCACGGAAGAGAAAGGCAATTTCGAAGGCGAAACTCAAAGAGCCGATTGCTGAAACTCCCGAGAAAGGAAGCCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGTGAAAACAGAAGAGGATTCGAAGAAAACCGATGCAAATTTAGCCGAAGAGAAGCAACAAAAAACGAACACGAATCCTCCCGAGCCTCCAAAAGATTACATTCATGTCCGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTCAGAAGAGAGAAAATCAGTGAACGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATTATCAACTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTTTCCATGAAGTTAGCATCTGTGAATACAACCAGAGTGGATTTCAACATGGATTCTCTGATCTTAAAACAAACGTACCAATCAGCCACCAGTTTGCCACATCCTATAGATTCCTCAGCTTCAAGCTATTATGGGCACCACCACCACCACCACTACCAAAAGCCCCCTCTCCCAGCCACCTCCATGGACCCTCTCGACTCTGTTTCATGTCAAAATCTCCCCATTCAACTCCCTCCTCTCAGTTCCTTCCCTCTAAATCCCTCTCAGTATCCAAGCTTTGGGGAGGAGGATGAGCTTCTAAGCATTGTTCATATGGGATTCGTCCAGAATCAAGCCCAAGGCAAAAACTATGATTGCAATCTCACAGCTTCTTCAACATAG 1437 46.0 MENEFFLNATEIPQSLMHFDSNPSMATWNHSFSSAMDVQPQQLQLHVPEFNNHCSSSHPSPPDCYLNPVPQQSFQFDSALSSMVSSPAPSNSNPTNDSFVIRELIGKLGANSGRRISELNSSSSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNFRSHLSIANEKLSRVSSSPSLKALGSETKLQEQKNNSSSQEDESSLSNPDKAISNPRKRKAISKAKLKEPIAETPEKGSPKKIKAVETKENVKTEEDSKKTDANLAEEKQQKTNTNPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLILKQTYQSATSLPHPIDSSASSYYGHHHHHHYQKPPLPATSMDPLDSVSCQNLPIQLPPLSSFPLNPSQYPSFGEEDELLSIVHMGFVQNQAQGKNYDCNLTASST 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8540065 8542718 + Cp4.1LG17g11130.1 Cpe17g01125 484443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01125 478 Gene3D - 293 365 IPR036638 GO:0046983
Cpe17g01125 478 SMART finulus 302 352 IPR011598 GO:0046983
Cpe17g01125 478 MobiDBLite consensus disorder prediction 175 285 - -
Cpe17g01125 478 MobiDBLite consensus disorder prediction 175 215 - -
Cpe17g01125 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Cpe17g01125 478 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 113 IPR024097 GO:0006355
Cpe17g01125 478 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 125 463 IPR024097 GO:0006355
Cpe17g01125 478 MobiDBLite consensus disorder prediction 228 270 - -
Cpe17g01125 478 Pfam Helix-loop-helix DNA-binding domain 300 347 IPR011598 GO:0046983
Cpe17g01125 478 PANTHER - 125 463 - -
Cpe17g01125 478 PANTHER - 58 113 - -
Cpe17g01125 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 361 IPR036638 GO:0046983
Cpe17g01125 478 CDD bHLH_AtBPE_like 286 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00116 Cpe-Chr8:747635 Cpe17g01125 Cpe-Chr17:8540065 2.14E-82 dispersed
Cpe13g00466 Cpe-Chr13:4893153 Cpe17g01125 Cpe-Chr17:8540065 3.44E-53 dispersed
Cpe17g01125 Cpe-Chr17:8540065 Cpe18g00815 Cpe-Chr18:7580336 6.67E-49 dispersed
Cpe18g00931 Cpe-Chr18:8230223 Cpe17g01125 Cpe-Chr17:8540065 2.47E-44 dispersed
Cpe20g00290 Cpe-Chr20:1619873 Cpe17g01125 Cpe-Chr17:8540065 7.87E-45 dispersed
Cpe12g01104 Cpe-Chr12:9140287 Cpe17g01125 Cpe-Chr17:8540065 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50858 PF00010 HLH 3.60E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01125 - - csv:101204984 642.499