Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe17g01125 | ATGGAGAACGAATTCTTCCTCAATGCTACTGAAATCCCTCAATCTCTTATGCATTTCGACTCCAATCCTTCCATGGCGACCTGGAACCACTCCTTTTCGTCCGCCATGGATGTTCAACCTCAACAACTTCAGCTTCATGTTCCTGAGTTCAATAATCACTGTTCTTCCTCTCATCCTTCGCCTCCGGATTGCTATCTCAATCCAGTTCCTCAACAGAGCTTCCAATTCGATTCCGCTCTGAGTTCCATGGTTTCTTCTCCAGCGCCCTCCAATTCCAACCCTACCAACGATAGCTTTGTGATCAGAGAACTGATCGGAAAATTAGGCGCAAATTCCGGGAGGAGAATCTCGGAATTGAACTCTTCTTCTTCTTCTTCCAGTGTGGCGGAGTTTTCGTCCGATCCTGGATTTGCTGAGCGTGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGACGTCAGTTGACGAATGAATTCGGTAATTTCAGATCTCACCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAAGCCCTCGGATCTGAAACGAAGTTGCAAGAACAGAAGAACAATTCCTCGTCGCAAGAAGACGAATCGTCTCTCTCAAATCCGGATAAGGCGATTTCGAATCCACGGAAGAGAAAGGCAATTTCGAAGGCGAAACTCAAAGAGCCGATTGCTGAAACTCCCGAGAAAGGAAGCCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGTGAAAACAGAAGAGGATTCGAAGAAAACCGATGCAAATTTAGCCGAAGAGAAGCAACAAAAAACGAACACGAATCCTCCCGAGCCTCCAAAAGATTACATTCATGTCCGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTCAGAAGAGAGAAAATCAGTGAACGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATTATCAACTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTTTCCATGAAGTTAGCATCTGTGAATACAACCAGAGTGGATTTCAACATGGATTCTCTGATCTTAAAACAAACGTACCAATCAGCCACCAGTTTGCCACATCCTATAGATTCCTCAGCTTCAAGCTATTATGGGCACCACCACCACCACCACTACCAAAAGCCCCCTCTCCCAGCCACCTCCATGGACCCTCTCGACTCTGTTTCATGTCAAAATCTCCCCATTCAACTCCCTCCTCTCAGTTCCTTCCCTCTAAATCCCTCTCAGTATCCAAGCTTTGGGGAGGAGGATGAGCTTCTAAGCATTGTTCATATGGGATTCGTCCAGAATCAAGCCCAAGGCAAAAACTATGATTGCAATCTCACAGCTTCTTCAACATAG | 1437 | 46.0 | MENEFFLNATEIPQSLMHFDSNPSMATWNHSFSSAMDVQPQQLQLHVPEFNNHCSSSHPSPPDCYLNPVPQQSFQFDSALSSMVSSPAPSNSNPTNDSFVIRELIGKLGANSGRRISELNSSSSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNFRSHLSIANEKLSRVSSSPSLKALGSETKLQEQKNNSSSQEDESSLSNPDKAISNPRKRKAISKAKLKEPIAETPEKGSPKKIKAVETKENVKTEEDSKKTDANLAEEKQQKTNTNPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLILKQTYQSATSLPHPIDSSASSYYGHHHHHHYQKPPLPATSMDPLDSVSCQNLPIQLPPLSSFPLNPSQYPSFGEEDELLSIVHMGFVQNQAQGKNYDCNLTASST | 478 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8540065 | 8542718 | + | Cp4.1LG17g11130.1 | Cpe17g01125 | 484443 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe17g01125 | 478 | Gene3D | - | 293 | 365 | IPR036638 | GO:0046983 | |
Cpe17g01125 | 478 | SMART | finulus | 302 | 352 | IPR011598 | GO:0046983 | |
Cpe17g01125 | 478 | MobiDBLite | consensus disorder prediction | 175 | 285 | - | - | |
Cpe17g01125 | 478 | MobiDBLite | consensus disorder prediction | 175 | 215 | - | - | |
Cpe17g01125 | 478 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 296 | 346 | IPR011598 | GO:0046983 | |
Cpe17g01125 | 478 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 58 | 113 | IPR024097 | GO:0006355 | |
Cpe17g01125 | 478 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 125 | 463 | IPR024097 | GO:0006355 | |
Cpe17g01125 | 478 | MobiDBLite | consensus disorder prediction | 228 | 270 | - | - | |
Cpe17g01125 | 478 | Pfam | Helix-loop-helix DNA-binding domain | 300 | 347 | IPR011598 | GO:0046983 | |
Cpe17g01125 | 478 | PANTHER | - | 125 | 463 | - | - | |
Cpe17g01125 | 478 | PANTHER | - | 58 | 113 | - | - | |
Cpe17g01125 | 478 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 294 | 361 | IPR036638 | GO:0046983 | |
Cpe17g01125 | 478 | CDD | bHLH_AtBPE_like | 286 | 372 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00116 | Cpe-Chr8:747635 | Cpe17g01125 | Cpe-Chr17:8540065 | 2.14E-82 | dispersed | |
Cpe13g00466 | Cpe-Chr13:4893153 | Cpe17g01125 | Cpe-Chr17:8540065 | 3.44E-53 | dispersed | |
Cpe17g01125 | Cpe-Chr17:8540065 | Cpe18g00815 | Cpe-Chr18:7580336 | 6.67E-49 | dispersed | |
Cpe18g00931 | Cpe-Chr18:8230223 | Cpe17g01125 | Cpe-Chr17:8540065 | 2.47E-44 | dispersed | |
Cpe20g00290 | Cpe-Chr20:1619873 | Cpe17g01125 | Cpe-Chr17:8540065 | 7.87E-45 | dispersed | |
Cpe12g01104 | Cpe-Chr12:9140287 | Cpe17g01125 | Cpe-Chr17:8540065 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50858 | PF00010 | HLH | 3.60E-06 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe17g01125 | - | - | csv:101204984 | 642.499 |