Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g01127 ATGGATGAGGATTTTGATATCCCTGCGGCGCCTGACATGAATGACGACTTGGATTTTCCTGATGAAACCGTTGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAGGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGAACTCAGTTTGATTCGAGCCGCGATCGTGGAACTCCGTTCAAGTTCACTCTTGGCCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAGAGTGAAAAAGCTCTTTTTACCATTCCTCCTGACTTGGCATATGGTGAATCTGGATCCCCACCAACCATTCCTCCTAGTGCTACATTGCAGTTTGATGTTGAGCTACTATCTTGGACAAGCGTCAAGGACATATGCAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGACAGAAATGGGAAAATCCAAAAGACCTTGATGAAGTGCTAGGCAAGTGCATATTTAATTTTGAGGCTAAGCTGGAAGATGGAACACTTGTTGCAAAAGCAGATGGAGTGGAATTCACCGTTGGGGATGGTTACTTTTGCCCTGCTCTTGCAAAGGCTGTAAAAACCATGAAGCTAGGTGAAAAGGCACTCCTCACGGTGAAACCACAATATGGGTTTGGGGAGAAGGGTAAACCAGCCTCTAGCAATGAAGGTGCAGTTCCACCAAATGCATCTCTCGATATTACACTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAGAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGGTATGAGAAGCCAAACGATGGTACTGTCGTCAAAGTGAAATTGGTTGGGAAGTTGGGAGATGGCAAGATATTTTTGAAGAAGGGATATGGTGATGGTGAAGAGCCATTTGAGTTTAAAACAGATGAAGAACAAGTGATTGATGGCCTCGACAAAGCTGTGGCAACAATGAAGAAAGGTGAGACAGCCCTGCTGACTATAGCACCTGAGTATGCTTTTGGTTCATCTGAGTCAAAACAGGAGTTAGCTGTAGTTCCTCCGAACTCAACTGTGTATTACGAAGTTGAACTAGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGAAAATTTGCCAGAGCCTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAACACGATTCTTCCTTTAGCGAAGAAGAGAAAAAACAGGCTAAGGCATTGAAAGTTGCATGCAATTTGAACGATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAAGGAGGCAGAGAAATTGTGCACCAAGGTACTGGAACTCGAAAGTTCAAATGTTAAAGCTCTATATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGATTTGGCCGAAGTTGACATCAAGAAAGCTCTCGAAATCGATCCAAATAACAGGCATGGATGTGAAATTGGAGTACAAAACTCTAAAGGAGAAGGTGAAGGAATACAACAAGAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAACAAGTGAGAAGAATCAGTCTATAA 1683 42.48 MDEDFDIPAAPDMNDDLDFPDETVALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGQKWENPKDLDEVLGKCIFNFEAKLEDGTLVAKADGVEFTVGDGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKPASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGTVVKVKLVGKLGDGKIFLKKGYGDGEEPFEFKTDEEQVIDGLDKAVATMKKGETALLTIAPEYAFGSSESKQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKFIEHDSSFSEEEKKQAKALKVACNLNDAACKLKLKLYKEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEVDIKKALEIDPNNRHGCEIGVQNSKGEGEGIQQEGCQVLRQHVCQNEQVRRISL 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8551303 8558585 - Cp4.1LG17g11400.1 Cpe17g01127 484445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g01127 560 Gene3D - 266 387 IPR046357 GO:0003755
Cpe17g01127 560 Pfam Tetratricopeptide repeat 486 519 IPR001440 GO:0005515
Cpe17g01127 560 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 287 383 IPR001179 GO:0003755
Cpe17g01127 560 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 180 261 IPR001179 GO:0003755
Cpe17g01127 560 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Cpe17g01127 560 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Cpe17g01127 560 PANTHER PEPTIDYLPROLYL ISOMERASE 1 272 - -
Cpe17g01127 560 Gene3D Tetratricopeptide repeat domain 389 531 IPR011990 GO:0005515
Cpe17g01127 560 SMART tpr_5 452 485 IPR019734 GO:0005515
Cpe17g01127 560 SMART tpr_5 403 436 IPR019734 GO:0005515
Cpe17g01127 560 SMART tpr_5 486 519 IPR019734 GO:0005515
Cpe17g01127 560 SUPERFAMILY FKBP-like 33 162 - -
Cpe17g01127 560 PANTHER PEPTIDYLPROLYL ISOMERASE 276 384 - -
Cpe17g01127 560 PANTHER PEPTIDYLPROLYL ISOMERASE 385 521 - -
Cpe17g01127 560 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 272 - -
Cpe17g01127 560 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Cpe17g01127 560 SUPERFAMILY FKBP-like 268 403 - -
Cpe17g01127 560 SUPERFAMILY TPR-like 391 520 IPR011990 GO:0005515
Cpe17g01127 560 Gene3D - 28 147 IPR046357 GO:0003755
Cpe17g01127 560 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 293 386 IPR001179 GO:0003755
Cpe17g01127 560 SUPERFAMILY FKBP-like 148 268 - -
Cpe17g01127 560 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 176 265 IPR001179 GO:0003755
Cpe17g01127 560 Gene3D - 148 265 IPR046357 GO:0003755
Cpe17g01127 560 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 276 384 - -
Cpe17g01127 560 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 385 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01284 Cpe-Chr3:10409223 Cpe17g01127 Cpe-Chr17:8551303 0 dispersed
Cpe13g01107 Cpe-Chr13:8901026 Cpe17g01127 Cpe-Chr17:8551303 5.38E-10 dispersed
Cpe14g00147 Cpe-Chr14:808802 Cpe17g01127 Cpe-Chr17:8551303 9.72E-09 dispersed
Cpe17g01127 Cpe-Chr17:8551303 Cpe19g00325 Cpe-Chr19:2813026 1.30E-17 dispersed
Cpe17g01127 Cpe-Chr17:8551303 Cpe17g01128 Cpe-Chr17:8559352 2.56E-11 tandem
Cpe15g00372 Cpe-Chr15:4942215 Cpe17g01127 Cpe-Chr17:8551303 1.84E-10 transposed
Cpe12g01106 Cpe-Chr12:9151197 Cpe17g01127 Cpe-Chr17:8551303 9.36E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g01127 K09571 - csv:101214513 932.169