Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00001 ATGGATAAACGGAGTTACAGTAGTAGACTGGAAACAAACAACCCAAATAAAGCCTATGCAAAGGAGCAGGATTCTCTTGGTGATGACTTCATAGATGATTTTCGCTTGCCCATCAACCATAGACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCGTTGGACACTCAATTAACTTCATCAAATGTGGGCTATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGAAAGGACGAGCAAGGAATTATTGAGCCCATTAAATCTGGAATTAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAGGAAAACATCCAGCGGAAAAAACTTGATGTTGAGATGGAAGAGACAGAAGCAGATGTGAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTTAAAGAAATACGCAAGGTTTTCTATTGTGATCTCTGCAACAAACAGTACAAGTTGGCTATGGAATTTGAAGCGCATCTCAGCTCATATGATCATAATCATAGAAAGGTAGGAAATTTTGCGTTTACTCATAAGTACTCCCTGTCTAGCAAAATCGTCATTCTCCTTTATTTCCTCTTCGAAGTTGCATCGAATCTAAAGCATTGTTGGATGAGATTGCAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGAGATGACAGAAACAAGCGGGAACAGCAACGTGAAGAGAGAGAGATGGCAAAATTTGCTCAAATTGCGGATGCCCGTAAGAAGGAGCAGCAAATGCTGGAGCAACAAGAAAGATCAGCCAAGGCGCCTGCTTCTACTGAAATTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGGAAAACATTAAAATTTGGATTCTCTTCTAAGGGTGGCACCTCGAAGAAGATTTTTGGTGGAGCCACAAAGAAACCTAAAGTAGTAGCCCCTGTAGCTTCAGTTTTCGGGAATGATAGTGATGAGGAATAG 1017 41.2 MDKRSYSSRLETNNPNKAYAKEQDSLGDDFIDDFRLPINHRPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRKKLDVEMEETEADVKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKVGNFAFTHKYSLSSKIVILLYFLFEVASNLKHCWMRLQRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKEQQMLEQQERSAKAPASTEIRNATSLADQDQRKTLKFGFSSKGGTSKKIFGGATKKPKVVAPVASVFGNDSDEE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 30625 34159 + Cp4.1LG18g00020.1 Cpe18g00001 484462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00001 338 MobiDBLite consensus disorder prediction 1 24 - -
Cpe18g00001 338 MobiDBLite consensus disorder prediction 230 271 - -
Cpe18g00001 338 Pfam G-patch domain 63 103 IPR000467 GO:0003676
Cpe18g00001 338 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 6 338 - -
Cpe18g00001 338 SUPERFAMILY beta-beta-alpha zinc fingers 155 184 IPR036236 -
Cpe18g00001 338 MobiDBLite consensus disorder prediction 272 293 - -
Cpe18g00001 338 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Cpe18g00001 338 MobiDBLite consensus disorder prediction 230 293 - -
Cpe18g00001 338 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676
Cpe18g00001 338 Pfam Zinc-finger double-stranded RNA-binding 157 184 IPR022755 -
Cpe18g00001 338 SMART G-patch_5 60 105 IPR000467 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00488 Cpe-Chr9:3222739 Cpe18g00001 Cpe-Chr18:30625 2.33E-09 dispersed
Cpe16g00163 Cpe-Chr16:3730293 Cpe18g00001 Cpe-Chr18:30625 2.03E-06 dispersed
Cpe18g00001 Cpe-Chr18:30625 Cpe01g01966 Cpe-Chr1:16828099 1.38E-07 dispersed
Cpe18g00001 Cpe-Chr18:30625 Cpe12g00815 Cpe-Chr12:7300109 2.45E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00001 - - cmax:111467909 559.296