Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00029 ATGGAGCACTTGTTCATGAAGCTCAAGAACTGGAAGAACTCTGAAAATGCTTCTGCTGCTGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATTTGATCATTCGTGGCTCCGGGAGTATACATATCGACGGTTCGAGCAACTTCGTCTCGAGTTTCTCGAAACGGGAGGAGGCCGAGAGGATAGCACAATGCAACGGGCGGGTTTTCTGCTTGCAAGATGAACCCGGGACGCACCGTATTTGGTTGCCGAATGGGGAAACGCCGGGGCTGTCATTGTCGAGATCGTTCGGAGATTTTTGTGTTAAGCATTTTGGTCTCATTTCTATGCCTGATGTAACACAAAGAAGTGTAACCAACCAAGACTTGTTTGTTGTACTTGCAACAGATGGGATTTGGGACGTGGTGTCGAATCAAGAGGCGGTACAAATCGTACATTCGACCGTCAATAGAGAAAAATCAGCTCGACATCTGGTCGATTATGCTACCGGTGCATGGAAGCGGAGGAGGCCGGGAATTGCAGCGGACGACATGTCGGTTGTCGTCCTCTTTCTCCATTCTTCACCTTTGCATCATCAACCTCTTGCTCTTATGTAG 594 48.32 MEHLFMKLKNWKNSENASAAEAMAKSAKKKDLIIRGSGSIHIDGSSNFVSSFSKREEAERIAQCNGRVFCLQDEPGTHRIWLPNGETPGLSLSRSFGDFCVKHFGLISMPDVTQRSVTNQDLFVVLATDGIWDVVSNQEAVQIVHSTVNREKSARHLVDYATGAWKRRRPGIAADDMSVVVLFLHSSPLHHQPLALM 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 539064 542585 + Cp4.1LG18g00320.1 Cpe18g00029 484490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00029 197 SUPERFAMILY PP2C-like 52 185 IPR036457 -
Cpe18g00029 197 SMART PP2C_4 6 182 IPR001932 -
Cpe18g00029 197 PANTHER ALPHABET, ISOFORM E-RELATED 56 192 - -
Cpe18g00029 197 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 56 192 - -
Cpe18g00029 197 ProSiteProfiles PPM-type phosphatase domain profile. 1 184 IPR001932 -
Cpe18g00029 197 Pfam Protein phosphatase 2C 53 161 IPR001932 -
Cpe18g00029 197 CDD PP2Cc 51 184 IPR001932 -
Cpe18g00029 197 Gene3D - 48 186 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00029 Cpe-Chr18:539064 Cpe12g00295 Cpe-Chr12:1959552 1.16E-58 dispersed
Cpe18g00029 Cpe-Chr18:539064 Cpe11g00894 Cpe-Chr11:7210013 2.32E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00029 - - bhj:120072181 244.973