Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00033 ATGAGTCAGACAGAAGTATCAAGGATTAAGCCCCCTCTCGTTCCGCTCGCTACTTTGATCGGTCGCGAGCTGAGGAACGAGAAGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCTGCTTTGGCAAAGAAAGGGGAGGACTACTTTCTGATCAAATTAGATTGCCACCGTATTCCTGGGAACACTTCCACCACGTTTTCTGTCTTTGCGATTTTTGATGGACATAATGGCATTTCAGCGGCTATTTTTGCTAAGGAACATTTATTGGGTAATGTCCTAAGTGCAATTCCTCAAGGGGTCAGTCGAGAAAAATGGCTTCAAGCCCTTCCTCGAGCACTAGTTGCTGGTTTTGTTAAAACTGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGGACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACCGTTGCATCCGTGGGAGATTCACGGTGCATATTAGACGCCCAAGGAGGTGTGGTTTCTCTATTGACAGTTGATCATAGGCTGGAGGAAAACGAGGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGCGAGGTTGGGAGGCTCAATGTTTTTGGCGGGAATGAGGTCGGTCCTCTCCGCTGCTGGCCCGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCAATACCGCATGTTAAGCAAGTGAAGCTTTCTAATGCTGGTGGAAGGCTAATTATTGCTTCTGATGGTATTTGGGACACATTATCGTCTGATATGGCTGCAAAGTCGTGTCGAGGTTTACCTGCAGAGCTCGCTGCCAAGCTGGTTGTGAAGGAGGCTTTACGGTCAAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATTATCCCATCCGAGCAACCTATATTAATACCATCAACTCCAAGGAAGAAGCAGAATGTGCTCACTTCTCTCTTTGGTAAATCTGCCAACAAACTTTCTGCTGTTGGAGTTGTGGAGGAATTGTTTGAAGAAGGCTCTGCTATGCTTTCTGAAAGGTTAGGGAAAGATTTTCCTTCGGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGCGGATCAACCCGCAAATGAAAATTTGTCGATGAATTCGGGGCCGTTCTTTTCACCGTCGTCAAAGCCATGGGAAGGTCCATTCCTCTGTGCAAAGTGTAGAAGAAAGAAAGACGCCATGGAAGGGAAAAGGCCAATAAAACCTACAATAACTGTTTAG 1263 45.68 MSQTEVSRIKPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKLDCHRIPGNTSTTFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGVSREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDAQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSDMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILIPSTPRKKQNVLTSLFGKSANKLSAVGVVEELFEEGSAMLSERLGKDFPSDPNSGIFKCAVCQADQPANENLSMNSGPFFSPSSKPWEGPFLCAKCRRKKDAMEGKRPIKPTITV 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 574342 579068 - Cp4.1LG18g00330.1 Cpe18g00033 484494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00033 420 Pfam Protein phosphatase 2C 63 280 IPR001932 -
Cpe18g00033 420 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Cpe18g00033 420 CDD PP2Cc 43 297 IPR001932 -
Cpe18g00033 420 SMART PP2C_4 23 295 IPR001932 -
Cpe18g00033 420 Gene3D - 38 302 IPR036457 -
Cpe18g00033 420 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 419 - -
Cpe18g00033 420 PANTHER ALPHABET, ISOFORM E-RELATED 2 419 - -
Cpe18g00033 420 SMART PP2C_SIG_2 33 297 IPR001932 -
Cpe18g00033 420 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00317 Cpe-Chr9:1882819 Cpe18g00033 Cpe-Chr18:574342 0 dispersed
Cpe18g00033 Cpe-Chr18:574342 Cpe02g00310 Cpe-Chr2:1640017 2.77E-28 dispersed
Cpe18g00033 Cpe-Chr18:574342 Cpe04g00234 Cpe-Chr4:2873135 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00033 - - csv:101219622 793.497