Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe18g00070 | ATGGAGGCGGATACAATCGAGACAAAATTCTCGGAACAAAAAAATTCTCATCGCTCATGGTCTTTAAGATCTTGGTCTATTGAGTATAATCTGTTTCTTGAAAGCTGTCGGATGGATCAGCACGGGCATTGCCAGTCTCCATCCATGGGAGCGGTAGGCAGCGGAGGTCAGATAGCGTATGGTAGCAGCATGTACCATCCCAGCCAAATGACTGTCGGCCCGACATCTGGAGCTCAGTCTACTAGTCAGCCAAGTGGAGCTCAGCTTGCTCAACATCAGCTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGGCTTTTTGGTCAAATCAATACCAAGAGATTGAGAGAGTAATAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAAGACGTGCGAATGATATCAGCCGAGGCACCTGTTTTATTCGCTAGAGCATGTGAAATGTTCATCCTAGAATTGACTTTACGGTCATGGAATCATACCGAAGAGAACAAGCGTAGGACACTGCAAAAGAATGACATTGCTGCAGCTATCACAAGAACTGATATCTTCGACTTTCTGGTTGATATCGTGCCAAGGGAGGATCTGAAAGATGAAGCACTCACGTCGATTCCAAGAGGCTCAATAACGGTCGGGGGCCCCGGAGATGCACTTCCTTACTATATGTCGTCTCAGCACGCATCTCAGGTTGGGACACCAGGAATGATTATGGGCAAGCCCGTGATGGACCCGGGTAGTTATACTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGGCCAAGATCGAACCCCGACCGATCAATAG | 867 | 47.75 | MEADTIETKFSEQKNSHRSWSLRSWSIEYNLFLESCRMDQHGHCQSPSMGAVGSGGQIAYGSSMYHPSQMTVGPTSGAQSTSQPSGAQLAQHQLAYQHIHQQQQQQLQQQLQAFWSNQYQEIERVIDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEALTSIPRGSITVGGPGDALPYYMSSQHASQVGTPGMIMGKPVMDPGSYTQQSHPYMPPQMWQHGQDRTPTDQ | 288 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 1728604 | 1739773 | - | Cp4.1LG18g00690.1 | Cpe18g00070 | 484531 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe18g00070 | 288 | MobiDBLite | consensus disorder prediction | 264 | 288 | - | - | |
| Cpe18g00070 | 288 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 38 | 283 | - | - | |
| Cpe18g00070 | 288 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 38 | 283 | - | - | |
| Cpe18g00070 | 288 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 132 | 195 | IPR003958 | - | |
| Cpe18g00070 | 288 | SUPERFAMILY | Histone-fold | 97 | 204 | IPR009072 | GO:0046982 | |
| Cpe18g00070 | 288 | Gene3D | Histone, subunit A | 94 | 210 | IPR009072 | GO:0046982 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe16g00834 | Cpe-Chr16:8017190 | Cpe18g00070 | Cpe-Chr18:1728604 | 5.47E-11 | dispersed | |
| Cpe18g00070 | Cpe-Chr18:1728604 | Cpe18g00908 | Cpe-Chr18:8122394 | 2.06E-67 | dispersed | |
| Cpe05g00827 | Cpe-Chr5:5121571 | Cpe18g00070 | Cpe-Chr18:1728604 | 4.39E-08 | transposed | |
| Cpe18g00070 | Cpe-Chr18:1728604 | Cpe04g00147 | Cpe-Chr4:1422317 | 5.25E-150 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50860 | PF00808 | CBFD_NFYB_HMF | 3.40E-18 | CL0012 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe18g00070 | K08066 | - | csv:101209664 | 405.601 |