Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00079 ATGAAACACATTTTCAAGAAGTTTCATATCGGAAGCAATCACGATCCGAGTCGATCCAACGAGAATCCGTTGCCCGTAGCAGCGTCGTCGTCGTCGTCTCCATGCGTTTCTGATAATCGTCCTGCAACTGCTCCCGGCCTCACTTCTGGCAACTCTCCATTGAGTCCTTCGTCTTCGCCGTCGCTGGCAACAACTCCTCCAGGCGGCGGAAGTGTGACTCCGGTTTCGGTTGCTCCCAATCGGTCTGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCCAATTCGGACTTTCGGGATGATCCGGAGAAGGATCAAATTCGTGCTGCGTCGCTTTTGAGCTTCGGAAATCATCGAATTGATTCCACTGCCAGAGACCAGGGAGATGCTGCCGAGGTGCTCTCCAGACAATATTGGGAATACAATCTGCTTGGCTATGAAGATAAAGTGGTCAATGGGTTTTATGATGTTCTCTCCACGGATTCAGCAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTCGTGATGGTCAATATGACAGTTGATCGTGCATTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGTACTGAGGTGAGGGTTTTGGTTCAAAGGCTTGCTGAGCTTGTTATGGGACATATGGGCGGACCTGTAAAGGACGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCTATTGGTTCCATCAATATTGGCCTCTCAAGACATCGTGCATTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACAGGTGTCGAAGAAGATGCTGTGAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTATACCAGCAGACATATTAAGTGCAAAGGATACTACTTCCATTAAGCCTTACAACCCTAAAGTAAGCAAAATTTCTTCTCTTCACCACTATAATGATGCTGGAATTTCTTCTGCGAAGCCAACATCATTACTTGAGGAAGGCAGCAGTCAAAACTTTGAAGCAGAGGCCAGCTCACTGGTGGATGAGAAACTGAGCTATGGAAGGACAGAGTCTGTGCCGTCAAGCTCAGGTACTGAGACTTCTCGATACAAAGGGGCCCATTTTGGTGATAGTAATATTAGACTGAATGTCAATGTAGTTTCACTTGGTCAAAGCTCCGAGGATTCCAAAAATCTTTTTGAAGATCTTAATCCTTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTCTTAACAAATCCTCTGACAATAAAATTGAGGAGCTTCGGAAACCTGCTATTGGGCATGCTCCTGTGCCGTTATGGAAAAACCGGGTTGTTTTCAATGCAGTTCCCAAGAATAAAGAGTATGATTATATGGAGGGCCGTTTTCCAAGAACTAATTGTAGACCTAATGATCATAATACTGCATGCTCTTCTGTCTCTGAAAATGTTAATCCTAGTGGTTCAGGAATTTCCATTGACTCGAGGGTATCGATGAGAAGTGCTGAAGTTGGAAGTTCTTCATCTAATATGAACTTGCGGTCGACATCCACAATGATAGAGCCTAATATTTTGCCTTTGATTGACGAGCAGAACAGAAAGCTCAATGGAGAATATTCTGGAAATATAGACATGCAGGACGAAAAGGATCCGGGAAGTCCCAGCATATTGATTGATCCAAGTTCGAGGAGTAGGTTTGAGCAAGTTTATGATGACGTGGATGTAGGCCAATGTGAAATCCAATGGGAGGACCTCGTTATTGGGGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACCATGCTGATTGGAATGGCACAGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGGCAGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCAGTCACTCGTCCTCCTAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGCCCAAATTGTCAAATTGATGAAAGCCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTAATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTAGTTGATAAGAACTGGAATGTAAAGGTATCAGATTTTGGGTTGTCACGCTTGAAGCACAATACATTTTTGTCATCCAAATCAACTGGAGGAACGCTTTGGAATCATTCTATGGGAACTTGCAACATTGAGACTGCCTTGGAGTGGGATGAACCCTATGCAAGTTGTTGGTGCAGTCGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTGGATACCACGGTTGCAAGGATTATCTGGGAATGCTGGCAAACCGATCCAAACTTGCGCCCCTCATTTGCACAATTGGCCAATATTTTGAAGCCACTGCAGCGGCTCGTCATGCCGCTGCATTCGGACCAGCCGAGTTCATCGGTGCTGCAAGAGATATCTGTAAATTCTACACCTTGATTGGTATGCCTCATTTTTTTTTGTCAAGTGTGAATAAGGAAACTGGTTTTGGTTTCTCTTGA 2736 44.04 MKHIFKKFHIGSNHDPSRSNENPLPVAASSSSSPCVSDNRPATAPGLTSGNSPLSPSSSPSLATTPPGGGSVTPVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAASLLSFGNHRIDSTARDQGDAAEVLSRQYWEYNLLGYEDKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDRALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMAAPGTLIPADILSAKDTTSIKPYNPKVSKISSLHHYNDAGISSAKPTSLLEEGSSQNFEAEASSLVDEKLSYGRTESVPSSSGTETSRYKGAHFGDSNIRLNVNVVSLGQSSEDSKNLFEDLNPFQIKGTGKSFILNKSSDNKIEELRKPAIGHAPVPLWKNRVVFNAVPKNKEYDYMEGRFPRTNCRPNDHNTACSSVSENVNPSGSGISIDSRVSMRSAEVGSSSSNMNLRSTSTMIEPNILPLIDEQNRKLNGEYSGNIDMQDEKDPGSPSILIDPSSRSRFEQVYDDVDVGQCEIQWEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPNCQIDESRRIKMALDVARGMNCLHTSNPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTLWNHSMGTCNIETALEWDEPYASCWCSRFPESTTRNTQGSGYHGCKDYLGMLANRSKLAPLICTIGQYFEATAAARHAAAFGPAEFIGAARDICKFYTLIGMPHFFLSSVNKETGFGFS 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2046181 2062257 + Cp4.1LG18g00790.1 Cpe18g00079 484540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00079 911 CDD STKc_MAP3K-like 637 794 - -
Cpe18g00079 911 ProSiteProfiles Protein kinase domain profile. 631 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00079 911 SMART serkin_6 631 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00079 911 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 76 415 - -
Cpe18g00079 911 PANTHER SERINE-THREONINE PROTEIN KINASE 590 792 - -
Cpe18g00079 911 Gene3D Transferase(Phosphotransferase) domain 1 710 811 - -
Cpe18g00079 911 Gene3D Phosphorylase Kinase; domain 1 624 708 - -
Cpe18g00079 911 MobiDBLite consensus disorder prediction 15 76 - -
Cpe18g00079 911 PANTHER SERINE-THREONINE PROTEIN KINASE 418 586 - -
Cpe18g00079 911 Pfam Ethylene-responsive protein kinase Le-CTR1 139 334 - -
Cpe18g00079 911 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524
Cpe18g00079 911 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Cpe18g00079 911 PANTHER SERINE-THREONINE PROTEIN KINASE 76 415 - -
Cpe18g00079 911 MobiDBLite consensus disorder prediction 1 76 - -
Cpe18g00079 911 SUPERFAMILY Protein kinase-like (PK-like) 613 793 IPR011009 -
Cpe18g00079 911 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 590 792 - -
Cpe18g00079 911 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 418 586 - -
Cpe18g00079 911 Pfam Protein tyrosine and serine/threonine kinase 632 783 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00031 Cpe-Chr4:317721 Cpe18g00079 Cpe-Chr18:2046181 0 dispersed
Cpe17g00068 Cpe-Chr17:406723 Cpe18g00079 Cpe-Chr18:2046181 5.64E-19 dispersed
Cpe18g00079 Cpe-Chr18:2046181 Cpe20g00145 Cpe-Chr20:821271 1.81E-60 dispersed
Cpe18g00079 Cpe-Chr18:2046181 Cpe02g00257 Cpe-Chr2:1330695 2.15E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62971 PF14381 EDR1 1.30E-71 CL0125 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00079 - - csv:101218274 1321.61