Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00130 ATGTTCGGGATGACAACGGAGGTGGCGACCGTGGCAACAGTGGCGGTGGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGAGGGTAGAGAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATGTTAACTTCACTGATTGGTCAATTCACGAGCATTTTTACGTTGGTGATTGGCTCTATTTCGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACGAGCTACGATAGTTGCAACGAGAATGATTTCGTTTTCAACGTAACGAGAGGAGGACGAGACGTGTTTAACCTAACACAAGCAAAGCCATACTACTTTCTAAGCGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCGCCTCCCATTTCATCACCCAGAATTTCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCGGTATTGATCACGCTTGCCTTCACTAAAATCGTTCTTCTAAATTAG 525 44.57 MFGMTTEVATVATVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPRISNHSSSIQPLKPLSSLSVLITLAFTKIVLLN 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2867570 2868498 + Cp4.1LG18g01270.1 Cpe18g00130 484591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00130 174 PANTHER EARLY NODULIN-LIKE PROTEIN 20 13 149 - -
Cpe18g00130 174 PANTHER BLUE COPPER PROTEIN 13 149 IPR039391 GO:0009055
Cpe18g00130 174 Pfam Plastocyanin-like domain 45 126 IPR003245 GO:0009055
Cpe18g00130 174 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055
Cpe18g00130 174 Gene3D - 35 141 IPR008972 -
Cpe18g00130 174 SUPERFAMILY Cupredoxins 35 132 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00130 - - - cmos:111461613 330.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00182 Cpe-Chr4:1846310 Cpe18g00130 Cpe-Chr18:2867570 3.90E-31 dispersed
Cpe04g00183 Cpe-Chr4:1852202 Cpe18g00130 Cpe-Chr18:2867570 2.85E-44 dispersed
Cpe18g00130 Cpe-Chr18:2867570 Cpe16g00322 Cpe-Chr16:5070195 9.06E-13 dispersed
Cpe18g00130 Cpe-Chr18:2867570 Cpe05g00270 Cpe-Chr5:1516110 1.95E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe07g00325 . 1 164 Phytocyanin Superfamily AT5G25090 53.4 9.8e-37 150.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe16g00842 CCT 83 283 Phytocyanin Superfamily AT1G08500 59.4 5.7e-63 238.0
Cpe18g00130 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00130 Cpe_Chr18 FPKM 4.524304 4.720227 28.424376 29.017324 63.386337 67.812767 69.022194 19.510727 16.539049 16.985884