Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00169 ATGCAGTCAAAGTCAGAAACCAATAATCAGCTCCAATCTGATCCAAATGGTGCTCCATCCACGACTATCTATTATGAACCCTGGTGCAGTTCTATGGGGTACAGTCCTTTTCCGTTACCTGTGGTTGGGGGAAATGCTTCCAGTTCGACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAACGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCTCATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTCTCTTCCAATTTGCCAGCTATGCACGGTGAATGTCTGACACAGTCGACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGGGGAATGATGGCTTTCTATGGTCATCAGCCCGTGGGCTATCCTATGGTCGGAGCGCCACATGCTAGAATGCCATTGCCCATTGAGATTGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAAGAAGTTGATAAAAGCTAGAAAGCCATACCTTCACGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGGAGCAGTGGAGGACGTTTTGCGAAGAAAAATGAAGCTGATGGAAAGGAGAGTTCTGAACAGCAGCACGGAAGCTCCTTGACAATCAAGGCCTCTGAGTAG 771 46.56 MQSKSETNNQLQSDPNGAPSTTIYYEPWCSSMGYSPFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSNLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPVGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKESSEQQHGSSLTIKASE 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3291582 3296313 + Cp4.1LG18g01670.1 Cpe18g00169 484630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00169 256 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700|GO:0006355
Cpe18g00169 256 MobiDBLite consensus disorder prediction 1 25 - -
Cpe18g00169 256 MobiDBLite consensus disorder prediction 42 69 - -
Cpe18g00169 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 249 - -
Cpe18g00169 256 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Cpe18g00169 256 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Cpe18g00169 256 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Cpe18g00169 256 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 249 IPR001289 GO:0003700|GO:0006355
Cpe18g00169 256 MobiDBLite consensus disorder prediction 39 104 - -
Cpe18g00169 256 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Cpe18g00169 256 Gene3D - 173 235 - -
Cpe18g00169 256 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Cpe18g00169 256 MobiDBLite consensus disorder prediction 208 227 - -
Cpe18g00169 256 MobiDBLite consensus disorder prediction 228 242 - -
Cpe18g00169 256 MobiDBLite consensus disorder prediction 84 104 - -
Cpe18g00169 256 MobiDBLite consensus disorder prediction 205 256 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe16g00877 Cpe18g00169 CCT
Cpe04g00917 Cpe18g00169 CCT
Cpe16g00877 Cpe18g00169 ECH
Cpe04g00917 Cpe18g00169 ECH
Cpe05g00493 Cpe18g00169 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01178 Cpe-Chr10:8668910 Cpe18g00169 Cpe-Chr18:3291582 6.21E-32 dispersed
Cpe11g01190 Cpe-Chr11:9734654 Cpe18g00169 Cpe-Chr18:3291582 2.76E-31 dispersed
Cpe18g00169 Cpe-Chr18:3291582 Cpe19g01172 Cpe-Chr19:7895436 3.21E-32 dispersed
Cpe12g00827 Cpe-Chr12:7365749 Cpe18g00169 Cpe-Chr18:3291582 6.03E-39 wgd
Cpe16g00877 Cpe-Chr16:8298473 Cpe18g00169 Cpe-Chr18:3291582 4.40E-103 wgd
Cpe17g00690 Cpe-Chr17:5519163 Cpe18g00169 Cpe-Chr18:3291582 6.43E-45 wgd
Cpe18g00169 Cpe-Chr18:3291582 Cpe04g00917 Cpe-Chr4:8349277 3.27E-164 wgd
Cpe18g00169 Cpe-Chr18:3291582 Cpe05g00493 Cpe-Chr5:2909784 1.56E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50866 PF02045 CBFB_NFYA 1.60E-25 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00169 K08064 - csv:101212860 433.721