Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00182 ATGATTCAAGACGAAGGCATATCCACCATAACTTCCACCCCTCTCCAATTCTTCACAATGATGCCTCTTTCACCTAAATTGGGTTCTCCGTATCTATGGCTTAGAGAGCTCAAATCTGAGGAGAGGGGTTTGTATCTAATCCATTTGTTGCTTACTTGTGCAAACCATGTGGCTGTTGGTAGCCTTGACAGTGCTAATCTTGCCCTTGATCACATATCACATCTTGCTTCTGCTGATGGTGATACAATGCAGCGCATTGCGGCGTACTTCGCCGAGGCTCTTGCGGATCGAATCCTCAAGACATGGCCTGGTCTTTACAAGGCCTTTAACTCCACTAAGATACCAATGGTTTCAGAGGAGATTCTTGTTAAGAAACTGTTCTTTGAAATGTTTCCTTTTCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGGGAAAAGATGATTCATATAATTGATCTTAATGGGAATGAAACTGCTCAGTGGCTTGCACTTATGCAAGTATTGAGTGCTAGGCCTGAAGGGCCTCCCCATTTGAGAATCACTGGGGTTCATCCACAGAAGGAGATTCTGGATCAAATGGCTCCTAGGTTGACAGAAGTAGCAGAACAATTGGATATCCCATTTCAATTCAATTCCGTTATCAGCCGACTCGAGGATCTCGATATCGAAAAGCTTCGTGTAAAAACCGGGGAGGCTCTGGCTATCAATTCAGTTCTTCAGTTGCACACCCTTTTGGGCTCTGATGAAGTCTTGCAGAAACCATCATCATCTGCCAAGAGTGCCAATGTAGTTCAATACTCGAGATACTCGTTGAGCGAGTTACTCGACAAGGATTTGGTTAACGGAAGCAGTCCGAGTCCTGACTCGGTTTCTTCATCAGCTCTATCTCAAGCTAATGCAACAAAGATCAATAGATTTTTGGATGGATTGTGGAGCTTGACGCCTAAGGTGATGGTTGTGACAGAACAAGATTGTAACCATAATGGTTCAACTCTTATGGAGAGATTACTAGAGGCACTCCACACCTATGCAGCTATTTTTGATTGTTTGGAGTCTAACATGTCAAGAACATCCCAGGAGAGATTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATCATAGCTTGTGAGGGAATAGAGAGGAAGGAACGACATGAAAAACACGACAAATGGTGTCAACGATTCGATATCGCCGGGTTCAGGCATGTGTCTTTGAGTTATTATGGCATGCTGCAGGCACAGAGCCTGTTGCAGGGCTATGGTTGTGACGGTTATAGGATGAAGGAAGAAAACGGTTGTGTGATGATTTGTTGGCAAGATCGTCCATTGTTCACAGTATCAGCTTGGAGGTGCTGTAATAGAATGAATATAGAAACTGCTTTCTCATTATAG 1422 43.53 MIQDEGISTITSTPLQFFTMMPLSPKLGSPYLWLRELKSEERGLYLIHLLLTCANHVAVGSLDSANLALDHISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEEILVKKLFFEMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNGNETAQWLALMQVLSARPEGPPHLRITGVHPQKEILDQMAPRLTEVAEQLDIPFQFNSVISRLEDLDIEKLRVKTGEALAINSVLQLHTLLGSDEVLQKPSSSAKSANVVQYSRYSLSELLDKDLVNGSSPSPDSVSSSALSQANATKINRFLDGLWSLTPKVMVVTEQDCNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSQERLKLEKMLFGEEIKNIIACEGIERKERHEKHDKWCQRFDIAGFRHVSLSYYGMLQAQSLLQGYGCDGYRMKEENGCVMICWQDRPLFTVSAWRCCNRMNIETAFSL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3426105 3427526 - Cp4.1LG18g01790.1 Cpe18g00182 484643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00182 473 PANTHER SCARECROW-LIKE PROTEIN 3 2 461 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cpe18g00182 473 Pfam GRAS domain family 46 460 IPR005202 -
Cpe18g00182 473 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 461 IPR005202 -
Cpe18g00182 473 ProSiteProfiles GRAS family profile. 37 460 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00431 Cpe-Chr9:2748909 Cpe18g00182 Cpe-Chr18:3426105 0 dispersed
Cpe18g00182 Cpe-Chr18:3426105 Cpe01g02589 Cpe-Chr1:21009953 4.71E-88 dispersed
Cpe18g00182 Cpe-Chr18:3426105 Cpe04g00904 Cpe-Chr4:8239401 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50867 PF03514 GRAS 3.10E-139 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00182 - - csv:101215435 800.045