Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00215 ATGGCCACTCAGGCACTTGTTTCATCTTCCTTAACCTCCTCAGTTGGCGCCGCCAGACAAAGATTTGGTGCCAAACCCTGTCTTGGATCCTCCACAAAACAAGCTTCTTTTGTTGTTAGAGCTGAAGCCACTCCTCCCGTTAAGCAAGGAGCCAACCGAGCATTATGGTTTGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCAGGCGATTACGGGTTCGACCCACTAGGGCTATCGGACCCTGAAGGTACGGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGGGAGGTAATCAACGGGCGGTTCGCAATGTTGGGAGTAGTAGGAGCCATAGCCCCAGAGATATTAGGGTCACTAGGGCTAATCCCACAAGAAACAGCCCTCCCATGGTTCAAAACTGGGGTGATCCCACCAGCAGGGACCTACAACTATTGGGCAGACCCCTACACCCTATTTGTACTTGAAATGGCTCTAATGGGGTTCGCTGAACATAGAAGATTTCAAGATTGGGCTAAGCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGTGTAGAGAGGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCTCTAGGGTTTGGGAAAGATGAGAAGTCAATGAAGGATTTGAAGCTAAAAGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCCATATTGGGTTTGTTTATACAAGGACTTGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCTATTAACAATAACCTCTTGACAAGCCTTAAATTTCACTAG 822 49.03 MATQALVSSSLTSSVGAARQRFGAKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEILGSLGLIPQETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGVERFLGGSGDPAYPGGPLFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGLFIQGLVTGVGPYQNLLDHLSDPINNNLLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3779146 3780558 - Cp4.1LG18g02160.1 Cpe18g00215 484676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00215 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Cpe18g00215 273 Pfam Chlorophyll A-B binding protein 64 242 IPR022796 -
Cpe18g00215 273 Gene3D Chlorophyll a/b binding protein domain 53 272 - -
Cpe18g00215 273 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 272 - -
Cpe18g00215 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 272 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00215 Cpe-Chr18:3779146 Cpe18g00788 Cpe-Chr18:7444269 1.19E-49 dispersed
Cpe18g00215 Cpe-Chr18:3779146 Cpe04g00872 Cpe-Chr4:8010354 1.66E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00215 K08909 - csv:101202993 513.842