Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00224 ATGGGAGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCGAAGAAGTCAGAAAAATCTCAGTCATCAGAACACGATGAAAACACGAGGACAGCTACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATCGATGCAGATAAACTTCAGCACGAGTTTAACTCGAATTTTACACCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGGAACAGCTTCTATTCCTTCTGATTCACTTCAAACATATGATGCATTGCATAATCAACACAACGATATAGAAGAACAGGCCGCGATACGCATCCAAACCATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGAGGTCATGCTGTCAGGAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTTCAGGCTCGTGTTCGAGCAAGGCATGTACGTATTGCATTGGAAAGTGAGACCGCACAACAAAAACTTCAACAACAAATTGAAAACCAAGCTCGAGTTCGAGAAATTGAAGATGGTTGGTGCGACACTGTTGGATCTGTTGAAGAAATTCAAGCAAAATTGTTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGAACAAGACAACAGGCTGCCCTGTTCCAGTTTGAGCCAGATAAAAACAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTCGACATCAATCTCAAAGACGGAGTGATGATTCGTGAGAACGGATCAGCTGAGGGCAAAAGTAACACTAAATCTCATATACAAACTACTGGCAAGAAAACAAACTTAGTGACTGATCAACCAAACCTCTCGAGCCAAAGAACCGCTGCCTCGCATTCTGATGGATGTGGTTCGTCGTCCCCGACTAAGTCAGCTGGCATTGTAGAGGTATCCAGTGCACAGGTTCAAAAGCTCAAGCATAAACTTGCACCTGAGAGGCCACTTGAACAAGTCAAACCTAAAGTAGATACCGATCCTGGTAGTCAAAACCGAACGGTGAGAAACTCGACTGGCAAAGCGACCGTTGAACCGAAGCCGATATCAAGAGGTGACTCAAAAGCTGCAAAACCCAGATCACAAAACTGA 1197 45.03 MGVSGKWFKALVGSKKSEKSQSSEHDENTRTATNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPGTASIPSDSLQTYDALHNQHNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRIALESETAQQKLQQQIENQARVREIEDGWCDTVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGTRQQAALFQFEPDKNSWGWNWLERWMAVRPWENRFLDINLKDGVMIRENGSAEGKSNTKSHIQTTGKKTNLVTDQPNLSSQRTAASHSDGCGSSSPTKSAGIVEVSSAQVQKLKHKLAPERPLEQVKPKVDTDPGSQNRTVRNSTGKATVEPKPISRGDSKAAKPRSQN 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3887819 3896686 - Cp4.1LG18g02250.1 Cpe18g00224 484685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00224 398 Gene3D - 93 144 - -
Cpe18g00224 398 MobiDBLite consensus disorder prediction 280 335 - -
Cpe18g00224 398 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cpe18g00224 398 MobiDBLite consensus disorder prediction 343 357 - -
Cpe18g00224 398 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cpe18g00224 398 MobiDBLite consensus disorder prediction 14 34 - -
Cpe18g00224 398 SMART iq_5 118 139 IPR000048 GO:0005515
Cpe18g00224 398 SMART iq_5 95 117 IPR000048 GO:0005515
Cpe18g00224 398 MobiDBLite consensus disorder prediction 360 379 - -
Cpe18g00224 398 MobiDBLite consensus disorder prediction 18 34 - -
Cpe18g00224 398 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Cpe18g00224 398 PANTHER IQ-DOMAIN 5-RELATED 2 373 - -
Cpe18g00224 398 PANTHER IQ-DOMAIN 5-RELATED 2 373 - -
Cpe18g00224 398 MobiDBLite consensus disorder prediction 279 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00224 - - - csv:101204117 650.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02257 Cpe-Chr1:19147453 Cpe18g00224 Cpe-Chr18:3887819 7.46E-53 dispersed
Cpe02g00266 Cpe-Chr2:1377504 Cpe18g00224 Cpe-Chr18:3887819 8.13E-67 dispersed
Cpe08g01113 Cpe-Chr8:8391889 Cpe18g00224 Cpe-Chr18:3887819 3.70E-17 dispersed
Cpe09g00017 Cpe-Chr9:104901 Cpe18g00224 Cpe-Chr18:3887819 6.13E-38 dispersed
Cpe12g00611 Cpe-Chr12:6065899 Cpe18g00224 Cpe-Chr18:3887819 1.83E-43 dispersed
Cpe13g00819 Cpe-Chr13:7295985 Cpe18g00224 Cpe-Chr18:3887819 1.22E-50 dispersed
Cpe14g00036 Cpe-Chr14:193668 Cpe18g00224 Cpe-Chr18:3887819 3.32E-45 dispersed
Cpe14g00349 Cpe-Chr14:2130909 Cpe18g00224 Cpe-Chr18:3887819 2.54E-35 dispersed
Cpe14g01046 Cpe-Chr14:8772549 Cpe18g00224 Cpe-Chr18:3887819 2.21E-11 dispersed
Cpe18g00224 Cpe-Chr18:3887819 Cpe19g01052 Cpe-Chr19:7252482 1.34E-44 dispersed
Cpe20g00197 Cpe-Chr20:1131548 Cpe18g00224 Cpe-Chr18:3887819 1.46E-21 dispersed
Cpe18g00224 Cpe-Chr18:3887819 Cpe06g00243 Cpe-Chr6:1295976 4.26E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g776 . . . . . . . . . Cmo11g00851 . . . . . . Cpe18g00224 . . . . . . . Cla02g01856 . . . . . . . Cone9ag0028 . . . . . Cme11g01678 . . . . . . . . . . Cmo20g00327 Cma02g00682 Cma20g00302 . Car20g00263 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01224 CCT,CST,ECH 60 212 IQD Protein Family AT3G09710 53.9 7.4e-41 165.6
Cpe01g02257 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.9 2.2e-100 363.2
Cpe13g00819 CCT,CST,ECH 1 469 IQD Protein Family AT3G52290 52.0 6.7e-97 351.7
Cpe18g00224 . 1 349 IQD Protein Family AT3G22190 59.8 3.0e-89 326.2
Cpe02g00266 . 1 434 IQD Protein Family AT2G26180 59.5 3.4e-114 409.1
Cpe06g00243 . 1 438 IQD Protein Family AT2G26180 58.2 1.2e-111 400.6
Cpe19g01052 . 49 327 IQD Protein Family AT2G33990 51.6 4.1e-65 245.4
Cpe14g00349 . 98 281 IQD Protein Family AT2G33990 53.5 2.7e-48 189.5
Cpe19g01052 . 49 301 IQD Protein Family AT3G15050 50.2 1.1e-59 227.3
Cpe14g00349 . 101 274 IQD Protein Family AT3G15050 61.6 9.4e-54 207.6
Cpe08g00649 . 1 500 IQD Protein Family AT4G00820 56.3 1.3e-126 450.7
Cpe08g00649 . 1 500 IQD Protein Family AT1G01110 51.7 6.7e-123 438.3
Cpe04g01092 CST 1 382 IQD Protein Family AT3G16490 51.6 1.3e-67 254.2
Cpe17g00525 CCT,CST,ECH 201 454 IQD Protein Family AT3G16490 50.2 1.9e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00224 Cpe_Chr18 FPKM 111.766342 123.284691 78.831535 79.099854 114.570183 114.137741 118.440414 71.467842 73.942581 78.406242