Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00256 ATGAGGCTTCAAGTGAACGACGGCGATGTCGACGACGATCTTGTTCCTCCCCCCAACTTCTCCAGTGTTGAGGATGGCATTTTCCGATCCGGCTTCCCTCAGCCTTCCAATTTTCCCTTCCTCAAGAATCTAAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAGAGCTAATAACATCAAGCTTTTTCAATTCAAAATTGAAGGGACAAAGGAGCCTTTCGTTTCGATTCCGAAGGATGCTATTCTGGACGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGCTCGCTCGTGGGTTGCCTGAGGAAGTTCCAGAACTGGTGCTTGACATCAGTGTTCGAGGAGTACCAGCGATATGCAGGCGTGAAATCAAGGGCGACGGATCTACAATTCATCGAGGCATTCAACATAGAGCCTTTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGGTATAGCTCAAACAAGAGAAGGCTGTTGTACAGAGAAGAGAAGTTGCAGAAGCCCCAAACAACACCAGTTTAG 603 46.43 MRLQVNDGDVDDDLVPPPNFSSVEDGIFRSGFPQPSNFPFLKNLNLRSIIYLCPEPYPEENLEFLRANNIKLFQFKIEGTKEPFVSIPKDAILDALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRYAGVKSRATDLQFIEAFNIEPLRQCVYSIIYQYQGYSSNKRRLLYREEKLQKPQTTPV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4212289 4214921 - Cp4.1LG18g02560.1 Cpe18g00256 484717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00256 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Cpe18g00256 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Cpe18g00256 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Cpe18g00256 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Cpe18g00256 200 Gene3D Protein tyrosine phosphatase superfamily 13 162 IPR029021 -
Cpe18g00256 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 183 - -
Cpe18g00256 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Cpe18g00256 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 183 - -
Cpe18g00256 200 Pfam Tyrosine phosphatase family 14 164 IPR004861 -
Cpe18g00256 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470|GO:0008138
Cpe18g00256 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 157 IPR029021 -
Cpe18g00256 200 CDD PFA-DSP_Siw14 14 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00827 Cpe-Chr4:7718030 Cpe18g00256 Cpe-Chr18:4212289 6.58E-74 dispersed
Cpe15g00854 Cpe-Chr15:8351458 Cpe18g00256 Cpe-Chr18:4212289 1.48E-29 dispersed
Cpe16g00749 Cpe-Chr16:7535164 Cpe18g00256 Cpe-Chr18:4212289 7.92E-70 dispersed
Cpe18g00256 Cpe-Chr18:4212289 Cpe05g01529 Cpe-Chr5:10530069 2.67E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00256 K18045 - csv:101211082 346.665