Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00257 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACACCATCCTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAACTTAGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCCGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGCAGATTTGGAGCTACGTGTAGATTTAATCATCCACCTAATAGGGAGCTGTACTACCTGAAGACAGGAACTTGCAAGTTCGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTATTGGCTATCCACTTCGCCCGAGTGAACCTGAATGTGCTTATTATATAAGAACTGGACAATGTAAGTTCGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGCGGTTCTCCTATTTATCCAACCGTACAATCGCCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCGAGGGCGTCGTTCATTCCTAGTCCACGATGGGAAGGCCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTCAATGATCAGCTCGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTCCCTGAGAGACCTGGCCAGCCTGAATGTCAGTTTTATATGAAGACTGGAGATTGCAAGTTCGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCCCCAGATTGTGTCTTGAGTCCTATAGGCCTGCCGTTACGTCCGGAAGGAAAAAAGATGTACAGGAGGGAGGGTTCATGTAAAGTTGATCCTGTTTTTTATGTCTGA 933 45.87 MEYDSGIPMSVTEGHSSALTPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNIIGYPLRPSEPECAYYIRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWEGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPEGKKMYRREGSCKVDPVFYV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4223686 4230084 + Cp4.1LG18g02510.1 Cpe18g00257 484718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00257 310 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872
Cpe18g00257 310 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Cpe18g00257 310 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 235 306 - -
Cpe18g00257 310 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 27 235 - -
Cpe18g00257 310 ProSiteProfiles Zinc finger C3H1-type profile. 123 151 IPR000571 GO:0046872
Cpe18g00257 310 ProSiteProfiles Zinc finger C3H1-type profile. 85 105 IPR000571 GO:0046872
Cpe18g00257 310 PANTHER PROTEIN PHOSPHATASE RELATED 27 235 - -
Cpe18g00257 310 PANTHER PROTEIN PHOSPHATASE RELATED 235 306 - -
Cpe18g00257 310 SUPERFAMILY CCCH zinc finger 127 151 IPR036855 GO:0046872
Cpe18g00257 310 MobiDBLite consensus disorder prediction 224 243 - -
Cpe18g00257 310 SUPERFAMILY CCCH zinc finger 247 272 IPR036855 GO:0046872
Cpe18g00257 310 Gene3D - 52 84 - -
Cpe18g00257 310 Gene3D - 232 306 - -
Cpe18g00257 310 Gene3D - 85 160 - -
Cpe18g00257 310 MobiDBLite consensus disorder prediction 224 240 - -
Cpe18g00257 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 270 IPR000571 GO:0046872
Cpe18g00257 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 126 150 IPR000571 GO:0046872
Cpe18g00257 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Cpe18g00257 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 104 IPR000571 GO:0046872
Cpe18g00257 310 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Cpe18g00257 310 SMART c3hfinal6 123 150 IPR000571 GO:0046872
Cpe18g00257 310 SMART c3hfinal6 82 104 IPR000571 GO:0046872
Cpe18g00257 310 SMART c3hfinal6 243 270 IPR000571 GO:0046872
Cpe18g00257 310 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01165 Cpe-Chr4:9954460 Cpe18g00257 Cpe-Chr18:4223686 4.51E-07 dispersed
Cpe18g00257 Cpe-Chr18:4223686 Cpe20g00333 Cpe-Chr20:1869479 1.94E-07 dispersed
Cpe18g00257 Cpe-Chr18:4223686 Cpe03g01375 Cpe-Chr3:11100001 7.71E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50870 PF00642 zf-CCCH 6.80E-09 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00257 - - cmos:111461480 619.002