Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00294 ATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCTAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCATGTGAGAGTCGGGGGTCGGGCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAGCCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCCTGAAGGAAGACGATATTGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGTAAAGAGAAACCGTCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATCGCCGTGGGAGATAACGCGATGTACTCGAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGACGTTATTGCAGTTCTATCGTAG 768 49.61 MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVAHVRVGGRAKRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSDYIALRASDVIAVLS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4482400 4490914 - Cp4.1LG18g02960.1 Cpe18g00294 484755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00294 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 SMART Cpn10_2 161 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 CDD cpn10 162 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 PIRSF Cpn21 1 255 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cpe18g00294 255 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
Cpe18g00294 255 PRINTS 10kDa chaperonin signature 64 79 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 PRINTS 10kDa chaperonin signature 86 107 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 PRINTS 10kDa chaperonin signature 120 132 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 PRINTS 10kDa chaperonin signature 141 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524|GO:0006457
Cpe18g00294 255 SUPERFAMILY GroES-like 161 254 IPR011032 -
Cpe18g00294 255 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 255 - -
Cpe18g00294 255 CDD cpn10 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cpe18g00294 255 SUPERFAMILY GroES-like 62 155 IPR011032 -
Cpe18g00294 255 Gene3D GroES chaperonin 56 156 IPR037124 GO:0006457
Cpe18g00294 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00433 Cpe-Chr8:2760877 Cpe18g00294 Cpe-Chr18:4482400 1.12E-08 dispersed
Cpe18g00294 Cpe-Chr18:4482400 Cpe19g00109 Cpe-Chr19:890426 2.52E-150 dispersed
Cpe18g00294 Cpe-Chr18:4482400 Cpe17g00303 Cpe-Chr17:2058701 4.74E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00294 K04078 - csv:101212396 451.055