Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe18g00294 | ATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCTAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCATGTGAGAGTCGGGGGTCGGGCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAGCCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCCTGAAGGAAGACGATATTGTCGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGTAAAGAGAAACCGTCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATCGCCGTGGGAGATAACGCGATGTACTCGAAGTACGCCGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTTCGGACGTTATTGCAGTTCTATCGTAG | 768 | 49.61 | MATAQLAGSLISARNLPSFSGLRPSAVKFSPSVAHVRVGGRAKRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSDYIALRASDVIAVLS | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 4482400 | 4490914 | - | Cp4.1LG18g02960.1 | Cpe18g00294 | 484755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe18g00294 | 255 | PANTHER | 10 KDA HEAT SHOCK PROTEIN | 1 | 255 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | SMART | Cpn10_2 | 161 | 254 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | SMART | Cpn10_2 | 63 | 154 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | CDD | cpn10 | 162 | 254 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | PIRSF | Cpn21 | 1 | 255 | IPR017416 | GO:0006457|GO:0046914|GO:1901671 | |
Cpe18g00294 | 255 | Hamap | Co-chaperonin GroES [groES]. | 63 | 155 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | Pfam | Chaperonin 10 Kd subunit | 64 | 153 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | Pfam | Chaperonin 10 Kd subunit | 162 | 253 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | ProSitePatterns | Chaperonins cpn10 signature. | 64 | 88 | IPR018369 | GO:0005524|GO:0006457 | |
Cpe18g00294 | 255 | PRINTS | 10kDa chaperonin signature | 64 | 79 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | PRINTS | 10kDa chaperonin signature | 86 | 107 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | PRINTS | 10kDa chaperonin signature | 120 | 132 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | PRINTS | 10kDa chaperonin signature | 141 | 154 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | ProSitePatterns | Chaperonins cpn10 signature. | 162 | 186 | IPR018369 | GO:0005524|GO:0006457 | |
Cpe18g00294 | 255 | SUPERFAMILY | GroES-like | 161 | 254 | IPR011032 | - | |
Cpe18g00294 | 255 | Hamap | Co-chaperonin GroES [groES]. | 161 | 255 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | PANTHER | 20 KDA CHAPERONIN, CHLOROPLASTIC | 1 | 255 | - | - | |
Cpe18g00294 | 255 | CDD | cpn10 | 63 | 154 | IPR020818 | GO:0005524|GO:0006457|GO:0140662 | |
Cpe18g00294 | 255 | SUPERFAMILY | GroES-like | 62 | 155 | IPR011032 | - | |
Cpe18g00294 | 255 | Gene3D | GroES chaperonin | 56 | 156 | IPR037124 | GO:0006457 | |
Cpe18g00294 | 255 | Gene3D | GroES chaperonin | 157 | 255 | IPR037124 | GO:0006457 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00433 | Cpe-Chr8:2760877 | Cpe18g00294 | Cpe-Chr18:4482400 | 1.12E-08 | dispersed | |
Cpe18g00294 | Cpe-Chr18:4482400 | Cpe19g00109 | Cpe-Chr19:890426 | 2.52E-150 | dispersed | |
Cpe18g00294 | Cpe-Chr18:4482400 | Cpe17g00303 | Cpe-Chr17:2058701 | 4.74E-13 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe18g00294 | K04078 | - | csv:101212396 | 451.055 |