Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00332 ATGGCGGATAAGAAAGGGACGGAACAAGTTGTTTTACGGATTTTGGATGGCGAAGAAGGAGTCGATGCAAGGAATGATCTCACTAATGGCTCTGTTGCTTCTGTTCCTGATTTTGAGCCAAAAGAAACTCGGAGTGTTAGGTGCGCAATCCCGCAATCCGTGGTTGAGAGCTCTCCTTCACACGAGATTTCCAGAATGAGTTCATTGAAACCTCCAAAAATTCCTGTATCGGCAGTTCGGCGCCCATCATTTGCTCGATCTTCATTTTCGAAACCGAAATCAAGGCTAATAGAGCCGCCTTGTCCTGATGGTGCAAGTTTGACGGAAGAAAATGCTCAAGCAAAATCAGCATCTGGTTCACCATTCTCTAGCTCTCCGAAGAGGGACTCACCAGCTAATATAGCCACTGCGACTAGTCCTAAAGAATCTTTGAAGTCTGCTCCGATAACTCCTAGAACACCATTGGTTGGATCTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTCTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCAAGGAAGAAATTGAAAAGAGCAGTTTTAATTGAATGGATTGCATTTTTGTGCATAACAGCGTGTTTAATTTCCAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATCTGGGGATTAGAACTGTGGAAATGGTGTGTTTTGGTATTAGTTATTTTCTGTGGTCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAATTTTCTACTTAAGAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTTCTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTATTTGATCAAAGCATCAAAAGATCTAAGAAAGTCAATGAGATTCTGAATTATGTTACACGAGCTCTTGCTGCTTCGCTAATTGGAGCAGGGTTATGGCTGGTGAAAACTTTGTTGGTGAAGATACTAGCTGCTTCTTTTCAATGCACTCGGTTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCTTGCGCACTCTATCAGGACCTCCACTGATGGAGATGGCCGAGAGGGTTGGGAGAGTGGCAAGCTCAGGGCAATTGAGCTTCAGGCATTTGAAGAAAGAAAGAGATGGTGGGAATGAGGGGAAGGAAGAAGTGATTGATGTGGATAAACTCAAAAAGATGAAGCAAGAAAAAGTGTCTGCTTGGACCATGAGAGGGCTGATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGGTGAGCAAAAAGACAAGGAGATTAACAGTGAATGGGAAGCAAGTGCTGCAGCTTACCAGATTTTCAGGAACGTTGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAACAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGGGTTGAAACTGGGAAGATAAAGCGAAAAACCCTTAAGAATTGGCTGGTGAACGTTTATATCGAACGGAAGTCGCTAGCCCACTCATTGAACGACACCAAAACTGCCATAGAGGAGCTAAACAGGCTTGCTTCTGCATTTGTACTGATTGTTATTGTCATTGTATGGCTACTTCTGATGGGTTTCTTGACCACACAAGTACTTGTCTTCATTTCATCACAGCTTCTACTGGTGGTTTTCATGTTTGGTAACACTGCCAAAACTATATTCGAAGCAATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGGTGTGTTGTAGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGTGATTCGATCGACTTTTCGGTTGACTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAATAAAATCATATCTTGAAAGCAAGCCTCAGTTCTGGCGGCCGAACCACAGCGTGATCGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTGAGTCTATACATCAATCACACCATAAACTTTCAGAACTATGGTGACCGGAGCAGTCGCAGATCGGATCTAGTTTTGGAGCTAAAGAAAATTTTCGAAGATCTGGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATGTGAGTGCAGTAGCACCCATGGTTTCGACAACCTCGCGGAGATGA 2310 41.95 MADKKGTEQVVLRILDGEEGVDARNDLTNGSVASVPDFEPKETRSVRCAIPQSVVESSPSHEISRMSSLKPPKIPVSAVRRPSFARSSFSKPKSRLIEPPCPDGASLTEENAQAKSASGSPFSSSPKRDSPANIATATSPKESLKSAPITPRTPLVGSTGSEEEDDEEVYKTAELKVKEKSRKKLKRAVLIEWIAFLCITACLISSLTIDKLLTKEIWGLELWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVLIWLALVLLAWGLLFDQSIKRSKKVNEILNYVTRALAASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAERVGRVASSGQLSFRHLKKERDGGNEGKEEVIDVDKLKKMKQEKVSAWTMRGLINVIRSSGLSTISNTIENFKEEEGEQKDKEINSEWEASAAAYQIFRNVAKPGSKYIDEEDLFRFMNKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELNRLASAFVLIVIVIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTIFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIDFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVIVKEIENVNKMKLSLYINHTINFQNYGDRSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYVSAVAPMVSTTSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4787006 4793759 - Cp4.1LG18g03290.1 Cpe18g00332 484793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00332 769 SUPERFAMILY Sm-like ribonucleoproteins 587 646 IPR010920 -
Cpe18g00332 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 758 IPR016688 -
Cpe18g00332 769 MobiDBLite consensus disorder prediction 25 44 - -
Cpe18g00332 769 MobiDBLite consensus disorder prediction 53 164 - -
Cpe18g00332 769 Pfam Mechanosensitive ion channel 541 743 IPR006685 GO:0016020|GO:0055085
Cpe18g00332 769 PIRSF Memb_At2g17000 17 768 IPR016688 -
Cpe18g00332 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 758 - -
Cpe18g00332 769 Gene3D - 597 646 IPR023408 -
Cpe18g00332 769 MobiDBLite consensus disorder prediction 109 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00045 Cpe-Chr6:232841 Cpe18g00332 Cpe-Chr18:4787006 3.09E-164 dispersed
Cpe12g00061 Cpe-Chr12:359718 Cpe18g00332 Cpe-Chr18:4787006 0 dispersed
Cpe16g00335 Cpe-Chr16:5154578 Cpe18g00332 Cpe-Chr18:4787006 0 dispersed
Cpe17g00260 Cpe-Chr17:1711398 Cpe18g00332 Cpe-Chr18:4787006 0 dispersed
Cpe18g00332 Cpe-Chr18:4787006 Cpe02g00286 Cpe-Chr2:1478648 0 wgd
Cpe18g00332 Cpe-Chr18:4787006 Cpe04g01033 Cpe-Chr4:9154023 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00332 K22048 - csv:101209209 1249.57