Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00340 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGAAGACCAATCCATAGCGAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGCGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTTCCAAGAGTGAAGTTGAAGCACCACCTCCGATTAAGCCTACAGATGATCAGCTGAGTTTAGCAGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACCGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAGTCTCACCGCAAGCAGATTGCACAAGAATTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCTATATATATCATCCTAGAGTACATGGATGGAGGTTCTTTGGCAGATTTTTTGAAAAAGGTTAAACAAGTTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCATACCTTCACCATGAACGACACATCATTCATCGGGACTTAAAGCCTTCTAATTTATTAATAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATATGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTATTGGAGAAAAATATGATAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTTCTCGAGTGTGCAACCGGAAAATTTCCTTATTCCCCACCAGAGCAAGAGGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCTAACTTCTGTTCATTCATTTCTGCATGTGTGCAAAAGGACCCAAGGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGTCTCCACTTGCAACTTTCTAA 1068 41.57 MRKGGFSNNLNLKLNLPQEDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSKSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKQVQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTYGEANTFVGTYNYMSPERIIGEKYDNKSDIWSLGLIFLECATGKFPYSPPEQEGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACVQKDPRDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4849508 4854132 + Cp4.1LG18g03380.1 Cpe18g00340 484801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00340 355 CDD PKc_MAPKK_plant_like 69 335 - -
Cpe18g00340 355 Gene3D Transferase(Phosphotransferase) domain 1 151 351 - -
Cpe18g00340 355 PANTHER MAP KINASE KINASE 9 354 - -
Cpe18g00340 355 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cpe18g00340 355 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00340 355 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00340 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 354 - -
Cpe18g00340 355 SUPERFAMILY Protein kinase-like (PK-like) 56 337 IPR011009 -
Cpe18g00340 355 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cpe18g00340 355 SMART serkin_6 71 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00340 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01040 Cpe18g00340 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01036 Cpe-Chr7:9324987 Cpe18g00340 Cpe-Chr18:4849508 2.38E-162 dispersed
Cpe09g01104 Cpe-Chr9:9526182 Cpe18g00340 Cpe-Chr18:4849508 2.33E-74 dispersed
Cpe11g01143 Cpe-Chr11:9470532 Cpe18g00340 Cpe-Chr18:4849508 7.06E-159 dispersed
Cpe18g00340 Cpe-Chr18:4849508 Cpe20g00165 Cpe-Chr20:929013 2.37E-68 dispersed
Cpe18g00340 Cpe-Chr18:4849508 Cpe04g01040 Cpe-Chr4:9193846 3.29E-25 wgd
Cpe18g00340 Cpe-Chr18:4849508 Cpe07g01073 Cpe-Chr7:9515287 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62978 PF00069 Pkinase 1.40E-71 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00340 K20603 - csv:101204545 687.952