Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00342 ATGGATTCCAACAGACAAAGAAATGTCGTCCGCTTTGTTAATTTTTTGAGGCGCCATTCTCCGACAATCAACACGAAACAGAGGAATGTTCTGGATCATCGGAAGGTTGAAGCCGAGGAAGAAGACGAAGTGGGAACCGCCGCCGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAATCGGAGTTGTGGGTTCGAGCTTGACTCTGGAGAAGGTCGCTGCAGCCAAACAGTTCATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTCAAGAACGCAAAGAGAGGCGTTCCGTGCTCGAAAAGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAAGATTTGGAGCTCAAGGAGACTCAATACATGAGGCTGAAAAGGCATAAAATTTGTGTCGAGGATTTCGACCTTTTGACGATTATTGGTCGAGGTGCTTTCGGGGAGGTCAGGCTTTGTCGGGAGAAGAAAACAGGCAACATCTATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCAAGTCACTGCATTGTGAAACTCTATTATTCTTTCCAAGATGCTGAATACTTGTATCTTATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACAGAAACCGTGGCTAGATTTTACGTCGCCCAAACTGTTTTGGCTATAGAGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTATCTTCTATAAATGAAAATGAAGTCCTTGACGACGAAAACTTGCCTGACACGGTGGACGTGGACGAGAGCTTTCCAGATAAGAAAAGCGGGAGGCGTTGGAAGAGCCCCCTCGAACAACTTCAGCACTGGCAGATTAACAGAAGGAAACTGGCGTTTTCCACGGTTGGCACTCCAGATTACATAGCTCCGGAAGTGTGGTCTCTTGGTGCAATAACGTACGAAATGCTTGTCGGTTATCCGCCATTTTATTCTGATGATCCAATAACAACATGCCGAAAGGCTCATCCTTGGTTTAAACATACCGAGTGGGACAAACTCTATGACATCGATGCAGCGTTTAAGCCCGAGGTCAACGACGAACTCGATACGCAGAATTTTATGCAGTTTGATGAGGTCGATCCACCGCCAACGAGAACCGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAGTTTTGTTGATTTGAAATCGAGCATCACCCCGACTCGGACTTCGTCAGTTGACTCGACTAAAAGTGACTCGGCATTGATCAACTACTCAACAGAGGACAGGGAAGCCATGTTGGCACCATCAGGGGATGCTTTGTCACAGTAA 1425 45.47 MDSNRQRNVVRFVNFLRRHSPTINTKQRNVLDHRKVEAEEEDEVGTAAVEEEEEEEEEEEIGVVGSSLTLEKVAAAKQFIENHYKAQKKHIQERKERRSVLEKKLASSDVSEEEQINLLKDLELKETQYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYVAQTVLAIEGHMKLSDFGLCKPLDCTNLSSINENEVLDDENLPDTVDVDESFPDKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVWSLGAITYEMLVGYPPFYSDDPITTCRKAHPWFKHTEWDKLYDIDAAFKPEVNDELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLSFVDLKSSITPTRTSSVDSTKSDSALINYSTEDREAMLAPSGDALSQ 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 4868147 4877502 - Cp4.1LG18g03470.1 Cpe18g00342 484803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00342 474 SUPERFAMILY Protein kinase-like (PK-like) 124 417 IPR011009 -
Cpe18g00342 474 PANTHER SERINE/THREONINE-PROTEIN KINASE 251 366 - -
Cpe18g00342 474 PANTHER SERINE/THREONINE-PROTEIN KINASE 43 254 - -
Cpe18g00342 474 PANTHER SERINE/THREONINE-PROTEIN KINASE 366 431 - -
Cpe18g00342 474 SMART pkinase_C_6 372 431 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cpe18g00342 474 ProSiteProfiles Protein kinase domain profile. 142 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00342 474 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 251 366 - -
Cpe18g00342 474 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 43 254 - -
Cpe18g00342 474 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 366 431 - -
Cpe18g00342 474 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Cpe18g00342 474 Pfam Protein kinase domain 144 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00342 474 Gene3D Phosphorylase Kinase; domain 1 76 262 - -
Cpe18g00342 474 Gene3D Transferase(Phosphotransferase) domain 1 313 405 - -
Cpe18g00342 474 MobiDBLite consensus disorder prediction 43 58 - -
Cpe18g00342 474 MobiDBLite consensus disorder prediction 37 58 - -
Cpe18g00342 474 ProSiteProfiles AGC-kinase C-terminal domain profile. 372 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01042 Cpe18g00342 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00907 Cpe-Chr17:7020142 Cpe18g00342 Cpe-Chr18:4868147 2.33E-159 dispersed
Cpe18g00342 Cpe-Chr18:4868147 Cpe02g00275 Cpe-Chr2:1427219 0 wgd
Cpe18g00342 Cpe-Chr18:4868147 Cpe04g01042 Cpe-Chr4:9213627 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62979 PF00069 Pkinase 2.80E-24 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00342 K08790 - csv:101208238 699.893