Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00382 ATGGGGAGGGCGTTGTCTGATACTGCAACTGCAACCCACTATCGTGTTTTTCCGGCTGACGATATGATTATCGGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTCCTTATCCTCTGAGCGGAATCTCGGTGAGTTCTGATGGAAATGGCAATGGTGGCGATTACTCTTCCTATTATCTGAAGGAAGCTCTAGCGGCTCTCCAGCGATATACGAACGAGTCGGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCGTGCGATAATTTCCGGATTTTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTTGCACATCCAGGTGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAGCTGTAAAAAAGGGGATTCGTGTGAGTTTGCTCATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACGCAGCCGTGCAAGGACGGGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCCCACACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGTACTCCCCCGAGCCGTTCGATGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCCCTCGGCCGATCTCTTGGCTCGAGCTCCATTAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTGAGCAAGGTCAAGTCACTACCATCTTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAATCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCTGCTCGACTTCTCGGACCATGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTAGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTGCTG 1203 53.45 MGRALSDTATATHYRVFPADDMIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPFDESPVRQCLDGSCAKSLPFLSSPVSVSPSATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELL 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5117200 5118424 + Cp4.1LG18g03970.1 Cpe18g00382 484843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00382 401 PANTHER UNKEMPT FAMILY MEMBER 30 401 IPR045234 -
Cpe18g00382 401 Gene3D - 155 218 - -
Cpe18g00382 401 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 30 401 - -
Cpe18g00382 401 MobiDBLite consensus disorder prediction 257 277 - -
Cpe18g00382 401 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 159 179 IPR000571 GO:0046872
Cpe18g00382 401 SMART c3hfinal6 189 212 IPR000571 GO:0046872
Cpe18g00382 401 SMART c3hfinal6 154 180 IPR000571 GO:0046872
Cpe18g00382 401 ProSiteProfiles Zinc finger C3H1-type profile. 155 181 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01381 Cpe-Chr8:9920910 Cpe18g00382 Cpe-Chr18:5117200 2.43E-56 dispersed
Cpe11g00092 Cpe-Chr11:489610 Cpe18g00382 Cpe-Chr18:5117200 2.95E-77 dispersed
Cpe15g00814 Cpe-Chr15:8117133 Cpe18g00382 Cpe-Chr18:5117200 5.24E-65 dispersed
Cpe07g01045 Cpe-Chr7:9388117 Cpe18g00382 Cpe-Chr18:5117200 1.68E-17 transposed
Cpe18g00382 Cpe-Chr18:5117200 Cpe02g00246 Cpe-Chr2:1280451 2.55E-18 wgd
Cpe18g00382 Cpe-Chr18:5117200 Cpe04g01075 Cpe-Chr4:9425986 0 wgd
Cpe18g00382 Cpe-Chr18:5117200 Cpe06g00230 Cpe-Chr6:1226770 3.57E-108 wgd
Cpe18g00382 Cpe-Chr18:5117200 Cpe07g00542 Cpe-Chr7:3599148 7.12E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50879 PF00642 zf-CCCH 1.80E-06 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00382 - - csv:101204432 669.463