Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe18g00395 | ATGTCGAGACTTCAGCGGCCTCCTCCTCCTCCTCCTCTTCTTGTTCTTGTTCTTTTGCTGAGCCAGAGTCTCACCCTAACGCACTGCCATACCAAGGGGCTCAAACCCAAGAGCTCGCCCAAGACCGTTCTTCCCGAGAATTCGACCACAACCCAATTCTCAGAGCAGCAATTTATGAAATGGGTCAAATTTGTCGGCAGTCTCCGACACTCTGTTTTCAGAACGGCGAAGAACAACCTTTTTCCTTCTTATACTCTCCATGTGGCTAAGAATCCGGCTGTCGGGGACTTCACGTCGATCCAAGACGCCGTCGATTCCCTCCCTTCAATCAATTTGGTCAGAGTCGTCATCAAGGTTCATGAAGGTGTATACACAGAGAAGGTGAACATACCCCCGTTGAAATCATTCATAACAATCCAAGGAGCAGGGGCTGACAAAACGATTGTTCAATGGGGAGACACCGCACAAACACCAGGCCCAAAGGGGCAGCCAATGGGGACTTACAACTCCGCAACATTCGCAGTAAATTCCCCTTATTTCATAGCCAAAAACATCACATTCAAGAACACCACCCCTGTTCCAGCACCAGGGGCAATCGGGAAGCAGGCAGTGGCGTTCAGAATCTCGGCGGACACAGCAGCATTCTACGGCTGTAGATTCTTGGGAGCTCAAGACACACTATACGACCATTTGGGTCGGCATTATTACAAGGATTGTTACATAGAAGGGTCGGTGGACTTCATATTCGGAAACGGGCTGTCTCTGTTCGAGGGATGTCACGTGCACGCAATAGCACAGAACGCAGGAGCGTTGACAGCGCAGGGGAGAAGCAGCCTGCTGGAGGACACAGGGTTCTCGTTCGTAAACTGTAAGGTCACGGGGTCTGGAGCGCTATACTTAGGGAGGGCATGGGGGCCCTTCTCTAGGGTCGTCTTCGCTTACACCTATATGGACAACATTATTCTCCCCAAAGGCTGGTACAACTGGGGCGATCCCAGCCGCGAAATGACGGTGTTTTATGGGCAATACAAATGTACAGGCGAAGGAGCTAGCTTTGCCGGCAGAGTTTCATGGTCGAGAGAGCTCACTGATGAAGAAGCCAAGCCCTTCATTTCCCTTACCTTCATTGATGGCTCTGAATGGATCAAAATATAA | 1155 | 50.56 | MSRLQRPPPPPPLLVLVLLLSQSLTLTHCHTKGLKPKSSPKTVLPENSTTTQFSEQQFMKWVKFVGSLRHSVFRTAKNNLFPSYTLHVAKNPAVGDFTSIQDAVDSLPSINLVRVVIKVHEGVYTEKVNIPPLKSFITIQGAGADKTIVQWGDTAQTPGPKGQPMGTYNSATFAVNSPYFIAKNITFKNTTPVPAPGAIGKQAVAFRISADTAAFYGCRFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQNAGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIILPKGWYNWGDPSREMTVFYGQYKCTGEGASFAGRVSWSRELTDEEAKPFISLTFIDGSEWIKI | 384 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 5184289 | 5186302 | + | Cp4.1LG18g03860.1 | Cpe18g00395 | 484856 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe18g00395 | 384 | PANTHER | PECTINESTERASE | 11 | 383 | - | - | |
| Cpe18g00395 | 384 | ProSitePatterns | Pectinesterase signature 2. | 241 | 250 | IPR033131 | - | |
| Cpe18g00395 | 384 | Pfam | Pectinesterase | 93 | 378 | IPR000070 | GO:0030599|GO:0042545 | |
| Cpe18g00395 | 384 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 11 | 383 | - | - | |
| Cpe18g00395 | 384 | SUPERFAMILY | Pectin lyase-like | 81 | 383 | IPR011050 | - | |
| Cpe18g00395 | 384 | Gene3D | - | 82 | 384 | IPR012334 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g01091 | Cpe18g00395 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00677 | Cpe-Chr1:3955450 | Cpe18g00395 | Cpe-Chr18:5184289 | 3.76E-169 | dispersed | |
| Cpe05g00247 | Cpe-Chr5:1412690 | Cpe18g00395 | Cpe-Chr18:5184289 | 1.37E-91 | dispersed | |
| Cpe05g01263 | Cpe-Chr5:8824096 | Cpe18g00395 | Cpe-Chr18:5184289 | 2.24E-82 | dispersed | |
| Cpe07g00413 | Cpe-Chr7:2683469 | Cpe18g00395 | Cpe-Chr18:5184289 | 2.36E-100 | dispersed | |
| Cpe13g00965 | Cpe-Chr13:8055090 | Cpe18g00395 | Cpe-Chr18:5184289 | 7.80E-09 | dispersed | |
| Cpe16g00079 | Cpe-Chr16:1588437 | Cpe18g00395 | Cpe-Chr18:5184289 | 1.19E-54 | dispersed | |
| Cpe03g01325 | Cpe-Chr3:10777213 | Cpe18g00395 | Cpe-Chr18:5184289 | 3.17E-50 | transposed | |
| Cpe06g00806 | Cpe-Chr6:5162260 | Cpe18g00395 | Cpe-Chr18:5184289 | 6.37E-85 | transposed | |
| Cpe12g00874 | Cpe-Chr12:7638477 | Cpe18g00395 | Cpe-Chr18:5184289 | 1.10E-58 | transposed | |
| Cpe14g00419 | Cpe-Chr14:2627811 | Cpe18g00395 | Cpe-Chr18:5184289 | 2.60E-91 | transposed | |
| Cpe16g00064 | Cpe-Chr16:1270114 | Cpe18g00395 | Cpe-Chr18:5184289 | 2.87E-74 | transposed | |
| Cpe18g00290 | Cpe-Chr18:4447301 | Cpe18g00395 | Cpe-Chr18:5184289 | 2.13E-89 | transposed | |
| Cpe18g00395 | Cpe-Chr18:5184289 | Cpe04g01091 | Cpe-Chr4:9501814 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe18g00395 | K01051 | - | csv:101215894 | 700.279 |