Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00398 ATGACAACATCTTTTTCTTCTCTGGAAACCATTTCCTTCTTCCTCCTCCTCCTCCTCTGTTCCCACCATGTCAATTCCCACCTCTACGAACAAGAACACTCTGTTCTTCTCCGACTCAACCACTTCTGGCACAACCAACCGCCGCTTCACCATTGGCGCTCCTCCAATGCTTCTCATTGTACATGGCCGGAGGTTCAGTGTACTGACAATTCCGTCACTGCCCTTCTTTTCCCTTCCTATAATTTGAACGGAACTTTCCCCCCTTTCATTTGCGACCTCAAAAATCTCACCTTTATTGATCTTCAGTACAATTTCATCACCGGCGGCTTTCCGACCACGCTTTACGATTGCTCGAACCTTAATTACCTCGACCTCTCGCAGAATTACTTTGTCGGCTCGATACCCAATGACGTCGATCGCTTGTCTCGTCTCCAGTTTCTTAATCTCGGCGCAAACAACTTCTCCGGTGACATTCCGACAGCCGTTTCGCGGTTGTCGGAACTCCGGTACCTTCATCTTTTTATGAATCAATTCAATGGGACTTACCCATCTGAAATCGGCAACTTATCGAATCTGGAAGAGTTGCTGTTGGCTTATAATTCAAATTTGCTACCAGCTGAATTGCCTCCCAGTTTCGCCCAATTGAAGAAATTGACGTTTTTGTGGATGGCAGAATCAAACGTGAACGGTGAAATTCCAGAATGGATCGGAAACTTGACCGCCCTCAAGCGATTGGATTTGTCGAAGAATCATTTGATTGGGGAAATTCCTAGCAGTTTGTTTACATTGAAGAATCTCAGCATCGTTTATCTCTACAAAAACAATCTATCAGGTGAAATTCCTCAGCGGATTGATTCTAAGAAAATCACCGAATACGACCTGTCGGAAAATAATCTGACCGGAAGAATTCCGGCGGCTATCGGCGATCTTCAGGAACTAACGGCTCTGCTTCTGTGTTCAAATCAGTTAAGTGGAGAAATCCCAGAAAGTATCGGTCGTCTTCCATTATTAACAGATGTCAGATTATTCAGCAACAATTTAAACGGTACATTACCGCCAGATTTCGGGCGAAATTCGATCCTCGAAAGTTTTCAGGTGAGTTCAAATAAGCTCACCGGAAGCTTGCCGGAACACCTCTGCTCCAGCGGTAAGCTCAAAGGAGTGGTTGCTTACGACAATAATCTTAGTGGGGAATTACCAGAATCTCTTGGGAGTTGCGATAGCTTGTTCATTATTGATGTTCATAAGAACAACTTCTCCGGGAAAATTCCGGTCGGTTTATGGACGTCTCTGAATTTAACATTTGTAATGATGAACGACAATTCTTTCATGGATGAACTCCCTCGGAGAATCTCCAAGAATCTCGCGAGATTACAAATCAGTAACAACAAATTTTCAGGGAAAATCCCATCAGAGTTATCTTCATTTTGGAATTTGACCGAGATTGAAGCAAGCAATAATCGATTGACAGGACGAATTCCTGAAGAACTCACTGCCCTTTCAAAGATGAACAAGCTATTGCTCGATGGAAATCAACTCACTGGGGAGCTTCCACGGAACATCATTTCATGGAGATCATTGCACAGCCTTAAACTCAGTCGAAATCGTCTCTCTGTTTCTGCTCTGTACATAATCAAGATCTATACAAAAACTGGAATCAAAGCAGATGTTGAATGGAAATTGACATCATTTCAGAGGCTGAATTTCTCAGAAGGTAATCTTTTATCTGGGCTGTCGGAGAACAACGTGATCGGCAGCGGTGGATCCGGGAAAGTTTACCGGATTCCAGTGAATAATCTGGGCGATATGGTGGCCGTGAAGAGAATATGGAACAGCAGAAAGTCAGACCACAAGCTTGAGAAAGAATTCATGGCGGAAGTTGAGATTCTCAGTTCGATTCGACATAACAATATAATCAAACTCCTCTGCTGCGTTTCCTGTGAAAGTTCACGACTGCTCGTTTACGAGTACATGGAGAAGCAAAGCCTGGACAAATGGCTACACAATAAGAATTCACTGCCAAGAATTGCAGGGTCGGGCGCTGTTCGCGGTGTCGCCCTCAATTGGCCGATGAGATTTCAAATTGCAGTGGGGGTAGCACAGGGCCTCTGTTATATGCACCATGAATGCTCCCCGCCGGTAATTCACAGAGACTTGAAGTCCAGCAATATCTTACTAGATTCAGAATTCAATGCCAAAATAGCAGACTTTGGCTTAGCTAAGTTGCTGGTGAAGCAAGGGGAACCAGCTTCAGTCTCCGCTGTCGCGGGCTCCTTCGGATACATGGCTCCAGAGTATGCCCAGATAACAAGAATTAACGAGAAGATCGATGTGTTTAGCTTTGGAGTTATACTTCTAGAGTTGGTGACCGGAAAGGAAGCTCTTACCGGCAATGAAGACTCGTCTCTGGCTATGTGGGCTTGGGAGTTCATTAAACAAGGCAAGGCAATAGTCGAAGCATTGGATGAGGATGTGAAGGAGACACATTATCTTGATGAAATGTGCAGTGTGTTCAAACTAGGACTGATCTGCACTTCCAGTGCGCCAACCAGCCGGCCGAGCATGAACCAGGCTCTGCAAATCTTGGTCCGCAGCCGGACCATGACACCTCAAAACCATGGAGATCAAAAAGTACAGACTCCCTGA 2646 44.97 MTTSFSSLETISFFLLLLLCSHHVNSHLYEQEHSVLLRLNHFWHNQPPLHHWRSSNASHCTWPEVQCTDNSVTALLFPSYNLNGTFPPFICDLKNLTFIDLQYNFITGGFPTTLYDCSNLNYLDLSQNYFVGSIPNDVDRLSRLQFLNLGANNFSGDIPTAVSRLSELRYLHLFMNQFNGTYPSEIGNLSNLEELLLAYNSNLLPAELPPSFAQLKKLTFLWMAESNVNGEIPEWIGNLTALKRLDLSKNHLIGEIPSSLFTLKNLSIVYLYKNNLSGEIPQRIDSKKITEYDLSENNLTGRIPAAIGDLQELTALLLCSNQLSGEIPESIGRLPLLTDVRLFSNNLNGTLPPDFGRNSILESFQVSSNKLTGSLPEHLCSSGKLKGVVAYDNNLSGELPESLGSCDSLFIIDVHKNNFSGKIPVGLWTSLNLTFVMMNDNSFMDELPRRISKNLARLQISNNKFSGKIPSELSSFWNLTEIEASNNRLTGRIPEELTALSKMNKLLLDGNQLTGELPRNIISWRSLHSLKLSRNRLSVSALYIIKIYTKTGIKADVEWKLTSFQRLNFSEGNLLSGLSENNVIGSGGSGKVYRIPVNNLGDMVAVKRIWNSRKSDHKLEKEFMAEVEILSSIRHNNIIKLLCCVSCESSRLLVYEYMEKQSLDKWLHNKNSLPRIAGSGAVRGVALNWPMRFQIAVGVAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGEPASVSAVAGSFGYMAPEYAQITRINEKIDVFSFGVILLELVTGKEALTGNEDSSLAMWAWEFIKQGKAIVEALDEDVKETHYLDEMCSVFKLGLICTSSAPTSRPSMNQALQILVRSRTMTPQNHGDQKVQTP 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5198861 5203324 - Cp4.1LG18g04050.1 Cpe18g00398 484859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00398 881 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 541 871 - -
Cpe18g00398 881 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 541 871 - -
Cpe18g00398 881 SMART serkin_6 578 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00398 881 SUPERFAMILY Protein kinase-like (PK-like) 573 862 IPR011009 -
Cpe18g00398 881 ProSitePatterns Protein kinases ATP-binding region signature. 584 607 IPR017441 GO:0005524
Cpe18g00398 881 SUPERFAMILY L domain-like 39 284 - -
Cpe18g00398 881 Gene3D Transferase(Phosphotransferase) domain 1 658 879 - -
Cpe18g00398 881 Gene3D Phosphorylase Kinase; domain 1 561 657 - -
Cpe18g00398 881 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 538 - -
Cpe18g00398 881 SUPERFAMILY L domain-like 286 543 - -
Cpe18g00398 881 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 13 538 - -
Cpe18g00398 881 Pfam Protein kinase domain 580 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00398 881 ProSiteProfiles Protein kinase domain profile. 578 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00398 881 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Cpe18g00398 881 Gene3D Ribonuclease Inhibitor 288 550 IPR032675 -
Cpe18g00398 881 Gene3D Ribonuclease Inhibitor 182 287 IPR032675 -
Cpe18g00398 881 Gene3D Ribonuclease Inhibitor 29 181 IPR032675 -
Cpe18g00398 881 SMART LRR_typ_2 500 524 IPR003591 -
Cpe18g00398 881 SMART LRR_typ_2 239 263 IPR003591 -
Cpe18g00398 881 SMART LRR_typ_2 141 165 IPR003591 -
Cpe18g00398 881 SMART LRR_typ_2 310 334 IPR003591 -
Cpe18g00398 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 714 726 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00398 Cpe-Chr18:5198861 Cpe05g00090 Cpe-Chr5:430776 1.34E-18 dispersed
Cpe07g00201 Cpe-Chr7:1285539 Cpe18g00398 Cpe-Chr18:5198861 8.71E-79 transposed
Cpe18g00398 Cpe-Chr18:5198861 Cpe04g01095 Cpe-Chr4:9522504 7.26E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62982 PF00069 Pkinase 1.50E-50 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00398 - - pavi:110751034 899.812