Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe18g00401 | ATGGACGAGGTCTCCGGCAACGACCTCCAACTTCACCGAGACGATTCACTTCACGACCTAGACCTCGCATCCACCAGTTCCGGTTTATCATCCATACTCAGCAGCGATGATTTCCGAAGCTCCTCCAGTTCCGGCGACATCTCCGTCACCAGCACTAGTTCCGGTGAGATTCCTGCTATTATTGTGGCTGAGGTCGCCCTGGATCCGAGGTCCGTTGAACTTACCACGTCGATGACCTCCACCACGGTATTAGAACCGGCCAGACGGAAGTGCGTCGGGAGGAACAATAGGGCGGGACTGCACTGGGGACTCACTTCGGTTATCGGACGGCGGAAGGAGATGGAGGACGCTATAGCTGTTAAGCCTGGATTCATGTCTTCAAGATGCGATCACGTCGGAGGTTGTACGGCTCCAGGTTCCAGAACCTCCGGGGAGATCTCGCCCGTTCATTTCTTCGCCGTTTACGATGGTCACGGCGGCTCTCAGGTGGCCAAATTCTGTGCGGAGCGGATGCATGAAGTGATAGCGGAAGAGTGGGGAAGAGAAGGAATCAAAGGCCATGAATGGCAGAAAAAGTGGGAAGTTGCCCTATCTAATGGCTTCCAGAGGACTGATGATGAGGTCGTGTCAGAGGCGGTGGCAACCGACATGGTTGGATCCACTGCGGTTGTAGTCGTTCTATCTGGCTGCCAGATTATTGCATCCAATTGTGGCGACTCTCGGGCGGTTCTGTTCCAGAAAAATAAGGCGATTCCATTGACAGTCGATCAAAAGCCTGATAGACAGGACGAACTCCTGAGAATTGAAAGAGAGGGAGGCAAAGTCATCAACTGGATGGGGGCTAGAGTGCTTGGAGTTCTTGCTATGTCAAGAGCCATAGGGGATCGGTATCTTCGGCCATGGATAATTCCAGTGCCGGAAATTAGTTTCACAACGAGGAGCGACGAGGATGAATGTTTGGTTCTGGCAAGCGATGGGCTTTGGGATGTAATGACGAATGAAGAGGTTGGGCAGGTGGCTTGCCATCTTCTTAGGAGGCTCCGCAGGTCGTCGACACCTGATGACACACCCCCGGCACAGATTGTGGCTAATAATCTCACTGAAATGGCCTATGGAAGAAACAGTTCCGATAACATTTCTGTTATTGTCATCGATCTGAAAGCAAGGAAAGCAAACCCACAGAGGTAA | 1188 | 52.19 | MDEVSGNDLQLHRDDSLHDLDLASTSSGLSSILSSDDFRSSSSSGDISVTSTSSGEIPAIIVAEVALDPRSVELTTSMTSTTVLEPARRKCVGRNNRAGLHWGLTSVIGRRKEMEDAIAVKPGFMSSRCDHVGGCTAPGSRTSGEISPVHFFAVYDGHGGSQVAKFCAERMHEVIAEEWGREGIKGHEWQKKWEVALSNGFQRTDDEVVSEAVATDMVGSTAVVVVLSGCQIIASNCGDSRAVLFQKNKAIPLTVDQKPDRQDELLRIEREGGKVINWMGARVLGVLAMSRAIGDRYLRPWIIPVPEISFTTRSDEDECLVLASDGLWDVMTNEEVGQVACHLLRRLRRSSTPDDTPPAQIVANNLTEMAYGRNSSDNISVIVIDLKARKANPQR | 395 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 5219854 | 5223668 | - | Cp4.1LG18g04070.1 | Cpe18g00401 | 484862 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe18g00401 | 395 | SMART | PP2C_4 | 91 | 384 | IPR001932 | - | |
| Cpe18g00401 | 395 | CDD | PP2Cc | 103 | 386 | IPR001932 | - | |
| Cpe18g00401 | 395 | SUPERFAMILY | PP2C-like | 86 | 387 | IPR036457 | - | |
| Cpe18g00401 | 395 | PANTHER | PROTEIN PHOSPHATASE 2C 6-RELATED | 54 | 394 | - | - | |
| Cpe18g00401 | 395 | ProSiteProfiles | PPM-type phosphatase domain profile. | 101 | 386 | IPR001932 | - | |
| Cpe18g00401 | 395 | Pfam | Protein phosphatase 2C | 104 | 379 | IPR001932 | - | |
| Cpe18g00401 | 395 | PANTHER | ALPHABET, ISOFORM E-RELATED | 54 | 394 | - | - | |
| Cpe18g00401 | 395 | ProSitePatterns | PPM-type phosphatase domain signature. | 151 | 159 | IPR000222 | GO:0043169 | |
| Cpe18g00401 | 395 | Gene3D | - | 90 | 394 | IPR036457 | - | |
| Cpe18g00401 | 395 | MobiDBLite | consensus disorder prediction | 28 | 52 | - | - | |
| Cpe18g00401 | 395 | SMART | PP2C_SIG_2 | 130 | 386 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe04g01099 | Cpe18g00401 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00568 | Cpe-Chr7:3762139 | Cpe18g00401 | Cpe-Chr18:5219854 | 9.38E-82 | dispersed | |
| Cpe11g00360 | Cpe-Chr11:1979639 | Cpe18g00401 | Cpe-Chr18:5219854 | 1.74E-76 | dispersed | |
| Cpe14g00050 | Cpe-Chr14:282020 | Cpe18g00401 | Cpe-Chr18:5219854 | 7.75E-74 | dispersed | |
| Cpe14g00139 | Cpe-Chr14:753740 | Cpe18g00401 | Cpe-Chr18:5219854 | 7.41E-59 | dispersed | |
| Cpe17g00529 | Cpe-Chr17:4410011 | Cpe18g00401 | Cpe-Chr18:5219854 | 3.95E-53 | dispersed | |
| Cpe17g00530 | Cpe-Chr17:4438775 | Cpe18g00401 | Cpe-Chr18:5219854 | 7.21E-49 | dispersed | |
| Cpe12g00650 | Cpe-Chr12:6359511 | Cpe18g00401 | Cpe-Chr18:5219854 | 3.17E-27 | wgd | |
| Cpe17g00528 | Cpe-Chr17:4395420 | Cpe18g00401 | Cpe-Chr18:5219854 | 3.24E-50 | wgd | |
| Cpe18g00401 | Cpe-Chr18:5219854 | Cpe04g01099 | Cpe-Chr4:9547830 | 4.26E-46 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe18g00401 | K14497 | - | csv:101220173 | 631.713 |