Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00421 ATGGGTGAAGTAGGGAATCGTGAGACGGATAATTTACCCCCGCCAAATGCTCAAACTAATAGTGCGGAAGTCGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGAATTTTACGGGGCTTGGTGGTGCAGTCTTGCCAGACCACCCTCATTTTCATCCTCAGCCTCGGTCTCAATCAGACTCACCGGTCCTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAACATTTGATGGTTTCGCCCATTGGAACACAAGCGCCCCATCCTGTGAGAAAGCCAGATTCTCCGAAGTCAAGATTGAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTATTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCTATAACAATGTGGAGAATGAAGCTTTCAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACGAGAGATCAGGGATGAGGTTGGAGAGGTGGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAAGCTCTTTTCCATGGTGATCATGTCAGCAACATGGCTTATATTCAGCAGGCAGCAAATGCGGCAATAACTGGAGCTATTGGATCGTCTGGTTATGCTTACCTTCCCACTTCAAAGAAAAGAAAAGTCCCAGAGCTATGCTTTGCCTCTGTAGGGAAGGATCCCCCCCTCAACAGCATTCCACAATTTCATCAGGTGAATAATTTAATGTCTTCAGGCACGTCTACATCATCTCCCCTCCCAGTTGCTCATGCTGGCAGCCCTGCAGCACCGGGGACTTCAAAGTTTTCATTCAGGTCCTTATTAGCTGACCTCGTCCAGCCACACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTGTCAAGTGAAGTTGCCAAGAACATTGCAGAAAAAAGAATTGCTGAGGAGCAGATAAATGATACACTACAGATTTCCCGTGCTTCATCAGCTGGAGATGGTTCACAGCATCAGAAGGCAGATGAGAAAGCTGCCGATGGTGGGTGTGGAAGTTTAAACCAAAGTGAGAGGCTTGTACATGATAATCATTCAGATAGTTCAGATATGACAAAATCAAGGCCAATGTCCCCAGGAACCTTAGCTTTAATGTGTGACGAACGAGATACAATGTTCATGGGAGCTGCTCCAGCTGATCGTTTGGCAGGGCATGGTTGCAGCACATCATCGCATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATAGAGCAGGAACGGATCGTGTTGACGAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATCAAGGAAACAAACTTCACGTCTAGAAGCGAGGAGAGGAACGAAAATCCAAGCAACAATGTCACAACAAATAGTGGATGCGAACAGGGAACTATCGACAATGGGGTCGTAAAAAGTGTCGCTCTCTCGGCACCCATAATACCGCAAGTCGGTACCTCAGCTGGTCGTCCTAGTAATGATCTGCTACCCAGAATTCTACCCCTTCCTGAAAATGGGAAGAGTAAACCAGAAGTTGGCAGAGAAGTGTAG 1776 45.66 MGEVGNRETDNLPPPNAQTNSAEVVSSDVPAKKLARQLNFTGLGGAVLPDHPHFHPQPRSQSDSPVLMVVQSQSQPKSPQHLMVSPIGTQAPHPVRKPDSPKSRLRSNVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCYNNVENEAFRREAVETTLERNPNAFRPKIASSPHGTREIRDEVGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVSNMAYIQQAANAAITGAIGSSGYAYLPTSKKRKVPELCFASVGKDPPLNSIPQFHQVNNLMSSGTSTSSPLPVAHAGSPAAPGTSKFSFRSLLADLVQPHDLKELCSVLVVLSSEVAKNIAEKRIAEEQINDTLQISRASSAGDGSQHQKADEKAADGGCGSLNQSERLVHDNHSDSSDMTKSRPMSPGTLALMCDERDTMFMGAAPADRLAGHGCSTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETNFTSRSEERNENPSNNVTTNSGCEQGTIDNGVVKSVALSAPIIPQVGTSAGRPSNDLLPRILPLPENGKSKPEVGREV 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5355816 5361927 + Cp4.1LG18g04150.1 Cpe18g00421 484882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00421 591 MobiDBLite consensus disorder prediction 1 30 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 515 539 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 58 85 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 560 591 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 97 112 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 394 445 - -
Cpe18g00421 591 SMART CXC_2 117 157 IPR033467 -
Cpe18g00421 591 SMART CXC_2 202 243 IPR033467 -
Cpe18g00421 591 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 24 92 - -
Cpe18g00421 591 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 93 548 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 43 112 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 11 26 - -
Cpe18g00421 591 MobiDBLite consensus disorder prediction 520 539 - -
Cpe18g00421 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Cpe18g00421 591 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Cpe18g00421 591 PANTHER TESMIN/TSO1-RELATED 93 548 IPR028307 -
Cpe18g00421 591 PANTHER TESMIN/TSO1-RELATED 24 92 IPR028307 -
Cpe18g00421 591 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe11g01118 Cpe18g00421 CCT
Cpe07g01018 Cpe18g00421 CCT
Cpe07g01018 Cpe18g00421 ECH
Cpe11g01118 Cpe18g00421 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01123 Cpe-Chr4:9714482 Cpe18g00421 Cpe-Chr18:5355816 0 dispersed
Cpe12g00188 Cpe-Chr12:1201487 Cpe18g00421 Cpe-Chr18:5355816 1.04E-34 dispersed
Cpe17g00155 Cpe-Chr17:988854 Cpe18g00421 Cpe-Chr18:5355816 5.42E-34 dispersed
Cpe11g01118 Cpe-Chr11:9298119 Cpe18g00421 Cpe-Chr18:5355816 0 wgd
Cpe18g00421 Cpe-Chr18:5355816 Cpe04g01122 Cpe-Chr4:9699835 5.44E-57 wgd
Cpe18g00421 Cpe-Chr18:5355816 Cpe07g01018 Cpe-Chr7:9222387 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50882 PF03638 TCR 3.10E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00421 - - csv:101222405 915.22