Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00422 ATGGCGTCCTCTTTCTTAATGGTTGTACAGCACACCCACTCTTTCTCCTCCAACTCTCTCTGTAAGTTCTCACTTCTCGCCCTTTGTTTACCGCGTTTTCCCACTTTCTCTACTCCCAAACACACACTTTGTTTACTTAGAGTTGGAGAGGGAGTTGTAGGAGAACTTTCAACCACTAGCAGAGACCGTAGACTTTCCAATTCCATGATTCAGAAGCTAAACAAAAATGGGTCTCGTCATTTAGGGAATGGAAATGAAATACTCGTTAAGAAATGTGCGGAAGACCTTGTTTATTTAGAGGTGGAGGAGAGAGATGGGAAACGGCTTGAGAGGGATAAAAACGCTAGGAATAGGAATGGCTCCGGCTCTGCTAATGGAATGAAAATGGGTGCTGGGGTTTCTTTCCTTAAGTCTAGAAGTGACAGTGGTTCCACAAAAGTTTCTAGGGGCGCAGGGGATGGTAGGAAGATTAAGGACAAGAGCAAGCGAAATCAGGTATTAGAGGAGAAGGGGAAATTTTCTGAAGAGAGGAACGATATCCCATTTAGAGAAAACTTGGATATGTTCTCGAAGACAGGGGATATTGCGGGCGCTATTGAATTGTATGAATGGGCTCAAAGGGAAGGAATTAAGCTGGAGCAATATCATTATGCTGTGATTTTGTATCTTTGTTCCTCAGCGGCTTTGGGTGTAATCCAGCCCGCAAAAATTGGTAGAGATAATCGAACTTCAAGTTCACTAACTTCATCTAATATGGGTTCTTTCCAAAATCCCATTATACTGGATGAACAACATTCCTCCAAGATTAGTTCTGTTTCAAAGAGTGAAAGTTATGAAAGGACAGAAACGAATGCCAAAAATGATGGAAGTAAGGAGAATATAGTTCATACAAATAGATCTATGGTGTCCAAAGCTCGGATTATTGATGAGAAGAGCTATTCAAATATTTTGGTAGATGAGGATTTTAAAAAATATGCTGTCGAGAAAGGATTCGAGATCTATGAGAAGATGTGCACAGAAAAGATCCCAATGAATGAAGCAACCTTGACATCTGTGGCCCGAATGGCAATGTCCATGGGCGATGGTGATATTGCTTTTGATATGGTGAAGAAGATGAAGCCATTAGGAATTAATCCTAGACTGCGGTCTTATGGCCCTGCCCTTTCTGCTTTCTGCAATAATGGGGAAATAGATAAAGCATTTGAAGTTGAGAAGCACATGTTGGAGCATGGTGTGTATCCAGAAGAGCCTGAGTTGGCAGCACTTCTAAAAGTTAGTATAAACGCGAGTAACGCTGAGAAGGTGTATTATTTATTGGATAAACTGAGAACAAGTGTAAGACAAGTCTCACCCTCTACCGCAGATCTTATCAGTACCTGGTTCAAGAGCAAAGTTGCTACAAGAGTGGGGAAAGTAAAATTGGATAGAACAAAAATAAAGGAAGCAATGGAAAATTGTGGTGGAGGTTGGCATGGATTGGGATGGTTGGGAAGGGGAAAGTGGAGTGTATCATCTACAAATGTTGGAAAGGATGGTTTGTGTACATCCTGTGGGGAAAGGTTAGCAACAATTGATCTTGACCCTATTGAAACTGAGAATTTTGCTAAATCTGTTGCAGCTATAGCCACACAAAGAGAGAAAAACTCAAATTTTCAGAAATTTCAAGAATGGCTTGAATATTATGGACCATTTGAAGCAGTGATTGATGCTGCTAATGTAGGCCTATTTAGCCAAAGAAGATTCACACCATCTAAAGTCAATTTAATTGCCAACGGGATACGGCCGTTGCTTCCTTCAAAGAAGCGGCCTCTGATTGTATTGCACAACAGGCGAATTACTGGACGTAAGATGGATGAACCAGTAAATAAAGCATTGATTGAGAAGTGGAAAAATGCTGATGCACTGTACTGGTTGTATGCAGCAATCAAATTCAATTGCCTAATTGTGACGAATGATGAGATGAGAGATCATACGTTCCAACTTCTTGGAAATGATTTCTTCCGTCGATGGAAAGAAAGGCATCAAGTGCACTTTAGTTTCTCCGCTACCGGTCCAGTGTTTCACATGCCTTCACCCTGTTCTGTCGTAATCCAGGAATCAGAGAATGGCCATTGGCATGTGCCCCTTGCTTCTGAGCATGGTTATGAAGAAGATAGAAAATGGCTATGTATTACAAGAGGGAATTCACAAGCACGCATGTTGAGGCGAGAGTCTCCCCTCAAAGTTGAAGAACCAGAACCGCAGCCTCTTCCTCTCAGCAAAGGAAGTTTGGGAACTCCGGCCGACGTCGAAATCAAGAAACAACCCTCAAGCCAAAATCAGAGGCTGAGGAAGCTACTTGCTTTCAGAATTCTCTCCTGA 2361 41.93 MASSFLMVVQHTHSFSSNSLCKFSLLALCLPRFPTFSTPKHTLCLLRVGEGVVGELSTTSRDRRLSNSMIQKLNKNGSRHLGNGNEILVKKCAEDLVYLEVEERDGKRLERDKNARNRNGSGSANGMKMGAGVSFLKSRSDSGSTKVSRGAGDGRKIKDKSKRNQVLEEKGKFSEERNDIPFRENLDMFSKTGDIAGAIELYEWAQREGIKLEQYHYAVILYLCSSAALGVIQPAKIGRDNRTSSSLTSSNMGSFQNPIILDEQHSSKISSVSKSESYERTETNAKNDGSKENIVHTNRSMVSKARIIDEKSYSNILVDEDFKKYAVEKGFEIYEKMCTEKIPMNEATLTSVARMAMSMGDGDIAFDMVKKMKPLGINPRLRSYGPALSAFCNNGEIDKAFEVEKHMLEHGVYPEEPELAALLKVSINASNAEKVYYLLDKLRTSVRQVSPSTADLISTWFKSKVATRVGKVKLDRTKIKEAMENCGGGWHGLGWLGRGKWSVSSTNVGKDGLCTSCGERLATIDLDPIETENFAKSVAAIATQREKNSNFQKFQEWLEYYGPFEAVIDAANVGLFSQRRFTPSKVNLIANGIRPLLPSKKRPLIVLHNRRITGRKMDEPVNKALIEKWKNADALYWLYAAIKFNCLIVTNDEMRDHTFQLLGNDFFRRWKERHQVHFSFSATGPVFHMPSPCSVVIQESENGHWHVPLASEHGYEEDRKWLCITRGNSQARMLRRESPLKVEEPEPQPLPLSKGSLGTPADVEIKKQPSSQNQRLRKLLAFRILS 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5362708 5369668 + Cp4.1LG18g04200.1 Cpe18g00422 484883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00422 786 MobiDBLite consensus disorder prediction 109 165 - -
Cpe18g00422 786 Pfam Pentacotripeptide-repeat region of PRORP 320 466 IPR033443 -
Cpe18g00422 786 Pfam Pentacotripeptide-repeat region of PRORP 172 231 IPR033443 -
Cpe18g00422 786 PANTHER OS02G0273800 PROTEIN 129 738 - -
Cpe18g00422 786 MobiDBLite consensus disorder prediction 736 770 - -
Cpe18g00422 786 CDD PIN_PRORP 566 678 - -
Cpe18g00422 786 Gene3D Tetratricopeptide repeat domain 318 726 IPR011990 GO:0005515
Cpe18g00422 786 TIGRFAM PPR: pentatricopeptide repeat domain 383 414 IPR002885 -
Cpe18g00422 786 MobiDBLite consensus disorder prediction 151 165 - -
Cpe18g00422 786 Gene3D - 526 689 - -
Cpe18g00422 786 PANTHER UNCHARACTERIZED 129 738 - -
Cpe18g00422 786 Pfam Protein-only RNase P 509 723 IPR031595 -
Cpe18g00422 786 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cpe18g00422 786 MobiDBLite consensus disorder prediction 271 291 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01123 Cpe18g00422 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00422 Cpe-Chr18:5362708 Cpe18g00104 Cpe-Chr18:2611766 1.43E-08 dispersed
Cpe01g00847 Cpe-Chr1:5018191 Cpe18g00422 Cpe-Chr18:5362708 2.45E-117 transposed
Cpe18g00260 Cpe-Chr18:4246419 Cpe18g00422 Cpe-Chr18:5362708 6.15E-08 transposed
Cpe18g00422 Cpe-Chr18:5362708 Cpe04g01123 Cpe-Chr4:9714482 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00422 K18213 - csv:101210714 1146.34