Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00464 ATGGCGACAATGGAGGTCGAGACCCAGCTAGCGACGTCGGCATCGGTCGGTACTTGCTCGGCGAAACAGGCGACGAACCAAGGCGAGGGTCTGAGGCAGTACTATCTTCAACATATTCACGAGCTCCAGCTCCAGGTTCGTCAAAAGACCCATAATCTGAATCGTCTTGAAGCTCAACGGAACGAGCTGAATTCGAAAGTGCGAATGCTCCGGGAAGAGCTGCAGCTGCTTCAAGAGCCAGGATCCTATGTTGGTGAAGTTGTTAAAGTCATGGGAAAGAACAAAGTTTTAGTTAAGGTTCACCCGGAAGGGAAATATGTTGTTGATATAGACAAAAGTATCGATATCACAAAAATCACACCTTCAACCAGAGTTGCTCTCCGTAACGACAGCTATGTTCTTCATTTAGTCTTGCCAAGCAAAGTAGATCCACTCGTTAATCTTATGAAAGTTGAAAAGGTTCCTGATTCTACTTATGATATGATTGGTGGTCTCGACCAGCAAATAAAAGAAATAAAAGAGGTTATTGAACTCCCCATTAAGCATCCTGAACTATTTGAGAGTCTTGGAATAGCTCAACCAAAGGGCGTTCTGCTATATGGACCACCTGGTACGGGGAAGACGCTGTTGGCTAGAGCAGTGGCTCACCATACAGATTGTACTTTCATCAGGGTTTCTGGGTCTGAATTGGTCCAGAAATATATTGGAGAAGGTTCTAGAATGGTTAGAGAGCTTTTCGTCATGGCCAGGGAGCATGCACCTTCTATCATTTTCATGGATGAAATCGATAGCATTGGGTCTGCTCGAATGGAATCTGGGAGTGGTAATGGTGATAGCGAGGTGCAGCGTACCATGTTGGAACTTCTTAACCAGCTTGATGGATTTGAAGCATCAAATAAGATCAAGGTACAGTGCATAAACGCCATATGTAATGAAGCGTTTAAACCAGATATTGGTTTTCGTTTAAAGTTGGTTTCTATCCGCTCGGCTGTATTACAGGTCTTGATGGCCACCAATAGGATCGATATCCTGGATCAAGCTCTTCTAAGGCCAGGACGAATTGACAGGAAGATTGAATTCCCAAATCCTAACGAGGATTCCCGGTTTGATATCTTGAAAATACATTCACGGAAAATGAATCTGATGCGTGGGATTGATTTGAAGAAAATTGCAGAGAAAATGAATGGTGCATCTGGTGCAGAGCTCAAGAACAACGAATGGGATGGAGACGAGGTATGGGGCAGGGATGTGTTGAAGTCATCAATTGGCCAAACCCCTAGTGACTCTGATCCTCTGCTTGAGAATCAGCCCGATTCATCCCATGAAACCTCTGATGAAATTAAGAACGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCCTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGCAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTCCTCCTTGTATTTCTAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCATATATTATGGACAAAGATGGGGCATTCAGGAATTCTTTCAATGATGGATGGGACCGTATTCTGTCCAAACATCCTATTCCGTTTTATTATTGTATCGGGGTCCTGGCCTTCTTTGTTCTGCTCGGATTCTTCGGCCTCATACTACATTGTTCCTCCCTGAATAGTAATGATCCACGAGTTGCTGGCTGTCACAACTGTTGCTATGGATGGGGCATCTTGGATTGTTTCCCTGCGTCTATGGAGGCCTGCTTTGCACTTGTTATTGTCTTCGTTGTCATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCCACTATGGGTATTCAAAGAATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATACGTGGTGGAGGATCTTCATGGTTGTTATACTCCTCCGAAATTGGAACCCGAACACGAACAGCACTTGAAAATGCTACAGCTTCTGTAA 2142 44.3 MATMEVETQLATSASVGTCSAKQATNQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSKVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVQCINAICNEAFKPDIGFRLKLVSIRSAVLQVLMATNRIDILDQALLRPGRIDRKIEFPNPNEDSRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKNNEWDGDEVWGRDVLKSSIGQTPSDSDPLLENQPDSSHETSDEIKNEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSEGFAFSHCTTCKAQFHLQVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFNDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMGIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5597500 5604934 + Cp4.1LG18g04710.1 Cpe18g00464 484925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00464 713 PANTHER BNAA02G04630D PROTEIN 331 403 IPR035261 GO:0036402
Cpe18g00464 713 Coils Coil 39 73 - -
Cpe18g00464 713 CDD bZIP_YAP 37 77 - -
Cpe18g00464 713 SMART ringv_2 459 509 IPR011016 GO:0008270
Cpe18g00464 713 Pfam ATPase family associated with various cellular activities (AAA) 197 361 IPR003959 GO:0005524|GO:0016887
Cpe18g00464 713 MobiDBLite consensus disorder prediction 420 438 - -
Cpe18g00464 713 Gene3D - 45 149 IPR012340 -
Cpe18g00464 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 404 IPR027417 -
Cpe18g00464 713 Gene3D - 150 362 IPR027417 -
Cpe18g00464 713 Gene3D - 363 405 - -
Cpe18g00464 713 SUPERFAMILY RING/U-box 458 513 - -
Cpe18g00464 713 MobiDBLite consensus disorder prediction 420 451 - -
Cpe18g00464 713 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 20 303 - -
Cpe18g00464 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 522 IPR013083 -
Cpe18g00464 713 CDD AAA 163 361 - -
Cpe18g00464 713 Pfam RING-variant domain 460 508 IPR011016 GO:0008270
Cpe18g00464 713 ProSitePatterns AAA-protein family signature. 332 350 IPR003960 GO:0005524|GO:0016887
Cpe18g00464 713 ProSiteProfiles Zinc finger RING-CH-type profile. 452 515 IPR011016 GO:0008270
Cpe18g00464 713 PANTHER BNAA02G04630D PROTEIN 20 303 IPR035261 GO:0036402
Cpe18g00464 713 SMART AAA_5 193 364 IPR003593 -
Cpe18g00464 713 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 331 403 - -
Cpe18g00464 713 CDD RING_CH-C4HC3_MARCH 460 509 - -
Cpe18g00464 713 Pfam Proteasomal ATPase OB C-terminal domain 84 139 IPR032501 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01176 Cpe-Chr4:10015254 Cpe18g00464 Cpe-Chr18:5597500 0 dispersed
Cpe18g00464 Cpe-Chr18:5597500 Cpe12g00780 Cpe-Chr12:7059134 2.64E-92 dispersed
Cpe10g00582 Cpe-Chr10:3390404 Cpe18g00464 Cpe-Chr18:5597500 1.17E-63 transposed
Cpe11g01091 Cpe-Chr11:9084664 Cpe18g00464 Cpe-Chr18:5597500 0 wgd
Cpe18g00464 Cpe-Chr18:5597500 Cpe04g01175 Cpe-Chr4:10012056 0 wgd
Cpe18g00464 Cpe-Chr18:5597500 Cpe07g00968 Cpe-Chr7:8757736 2.71E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00464 K03066 - csv:101220074 675.241