Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00465 ATGGCAGTCAGTTTAGCCTCAGCACTGGGATATTGCCCTCTCTTGGCGCTAGAAGCAATCGCAGAGTCAAACTCCGGCGTTTTGTCATTTCGCCTTATGATCATCGATACAGGTGACTTGATTTTCTTGAGAGTTTTTGGAATGACTTTTATCGCTTGCTTTGACTTCCATTCTGAATTTCACATGACTTTTTTAATTGCGTTTGAAAATTGGAAATATAAGGTCGCCTTGGATCTGGTGAACTATACTGCTGGCCTTGTTTATGTTCTCAATCCATTTATGATTTGGGAGACTTTTCTCGTTGTTTTGGTGGTATATACAGCTTGGGTCTCGCCATTCGAGTTTGGATTCCTCAAGAAACCCCAATCTCCACTTTCCATTACAGATAATGTGGTTAATGGGTTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTGGCTTACCTCGATAAATCCACTTATTTACTTGTCGACGAACCGAAGAAGATTGCTCTGAAGTATGCAAGTTCATGGCTAGTCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACATAAGATCTCCCCTTCACCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTGCTCTTTTTTCCAGACTGGAAAAAGATAGGAACTATAATTACTTTTGGGTTCGATGTGCAAAACTCGTTTGTGTTACTCTGTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTCCTTGCTGCTCGTTATCATGACCCAAAAAGGACATGGATTGGAGCATCTATGGAGGACTTTCTTGAGCAAAGTTTGTGGATTAGATATGTCACTTCGATTTACTGGTCTATCACTACCCTAACCACTGTCGGCTATGGTGACTTGCATCCTGTGAATACAAGGGAAATGGTTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTCGTCCATGGGACCAGTAGAACTAGAAAATTCAGGGATACCATACAAGCTGCATCTAGTTTTGCCCACAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACACTCGATTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGTCTACTTGTTTCGTGGTGTTTCAAATGACCTAATTTTTCAACTGGTTTCGGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGACGTGATTTTACAAAATGAAGCCCCAACAGACTTCTATATTCTTGTCACGGGTGCTGTGGATTTGCTTGTTCTTAAGAATGGAGTTGAACAGGCAAGTCTGTTCATTGAAGCTCTTGGATTTTCTGAATGTTGGGTTTTTGAATTACCCATGTGGCCGTCCAAGGCAATTGATTTACTGACTAAACTGTTCCAATGTTTGCAGGTTGTTGGAGAGGCTAAAACTGGTGAACTTTGCGGAGAGATTGGGGTGTTGTGTTACAGGCCACAACTGTTTACTGTGCGTACAAAACGATTGAGTCAGTTGCTGCGTCTGAATCGAACGGCTTTCCTGAATATTGTTCAATCTAATGTTGGTGATGGGACTATAATCATGAACAATCTTCTTCAGCACTTGAAAGACGTCAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGATTGGACCTACCACTTAGTCTTTGCTTTGCAACACTTAGAGGTGACGACTTGCTTTTACACCAACTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGATAACAATGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTCTATTACTGGACTTTGGAGCGGATCCCAACAGTAGAGATTCAGACGGGATTGTGCCATTATGGGAGGCGATACTAGGTGGCCATGAGGCAGTAGTGCAGCTACTTATAGACAATGGTGCTAATCTCCGATCAGGAGATGTGGGTCACTTCGCGTGTACTGCCGCAGAGCAAAACAACCTCCAGTTGCTCAAAGAGATTCTCCAATATGGCGGAGACGTTTTGAGTTCCAGGAACAATGGAACGACTGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATTGTCAAGTTCCTTCTTAAACAAGGAGCTGATATTGACAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAGACAATAAAAGAATCGAAAACTCAATCTGTCGTTGCCATTCCTGAGAAGCAGAAAGCGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCTTCCTTCGCCTCAGGAAGGAAATGATGGTTCATGGGCGGGTCAATCTCGTCCACGACGTAGGACTAACAACTTCCATAACTCATTGTTTGGAATCATGTCAGCAGCACATACAGGCGAGAAAGACATGAGTTTTGCTGATCACCAAACCAGAGGAGAGAAATCTGGAACCAACCCAGCAAGGGTGATAATCAGCTGTCCAGAGATTGGCGAAGTAGCTGGGAAGGTAGTGCTGCTTCCAGAAAGCTTCAACGAGCTGCTTGAGATTGGTTCCATGAAATATGGGATTATGGCTTCAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGGGACGGCGATCAGCTTATTTTTGTCAGCAATGGAGGAACCATGTAA 2826 42.64 MAVSLASALGYCPLLALEAIAESNSGVLSFRLMIIDTGDLIFLRVFGMTFIACFDFHSEFHMTFLIAFENWKYKVALDLVNYTAGLVYVLNPFMIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSITDNVVNGFFAVDIVLTFFVAYLDKSTYLLVDEPKKIALKYASSWLVFDVISTIPSELAHKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYHDPKRTWIGASMEDFLEQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLIFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQASLFIEALGFSECWVFELPMWPSKAIDLLTKLFQCLQVVGEAKTGELCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDVKDKDPIMEGVLLETENMLARGRLDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDFGADPNSRDSDGIVPLWEAILGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEILQYGGDVLSSRNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTIKESKTQSVVAIPEKQKAIRFLGRFTSEPMILPSPQEGNDGSWAGQSRPRRRTNNFHNSLFGIMSAAHTGEKDMSFADHQTRGEKSGTNPARVIISCPEIGEVAGKVVLLPESFNELLEIGSMKYGIMASKVLNKDGAAIEDIEVIRDGDQLIFVSNGGTM 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5605324 5611212 - Cp4.1LG18g04760.1 Cpe18g00465 484926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00465 941 ProSiteProfiles Ankyrin repeat region circular profile. 628 659 - -
Cpe18g00465 941 ProSiteProfiles Ankyrin repeat region circular profile. 661 692 - -
Cpe18g00465 941 SUPERFAMILY Ankyrin repeat 599 778 IPR036770 -
Cpe18g00465 941 PRINTS EAG/ELK/ERG potassium channel family signature 323 332 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00465 941 PRINTS EAG/ELK/ERG potassium channel family signature 129 139 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00465 941 PRINTS EAG/ELK/ERG potassium channel family signature 279 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00465 941 PRINTS EAG/ELK/ERG potassium channel family signature 305 316 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00465 941 PRINTS EAG/ELK/ERG potassium channel family signature 106 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00465 941 PRINTS EAG/ELK/ERG potassium channel family signature 140 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cpe18g00465 941 Gene3D Jelly Rolls 375 574 IPR014710 -
Cpe18g00465 941 ProSiteProfiles cAMP/cGMP binding motif profile. 411 550 IPR000595 -
Cpe18g00465 941 MobiDBLite consensus disorder prediction 810 831 - -
Cpe18g00465 941 SMART cnmp_10 411 565 IPR000595 -
Cpe18g00465 941 Pfam Ankyrin repeats (3 copies) 699 755 IPR002110 GO:0005515
Cpe18g00465 941 Pfam Ankyrin repeats (3 copies) 600 689 IPR002110 GO:0005515
Cpe18g00465 941 Gene3D - 92 332 - -
Cpe18g00465 941 ProSiteProfiles Ankyrin repeat profile. 628 660 IPR002110 GO:0005515
Cpe18g00465 941 SUPERFAMILY Voltage-gated potassium channels 94 332 - -
Cpe18g00465 941 CDD CAP_ED 411 553 IPR000595 -
Cpe18g00465 941 Gene3D - 596 780 IPR036770 -
Cpe18g00465 941 PRINTS Ankyrin repeat signature 741 755 IPR002110 GO:0005515
Cpe18g00465 941 PRINTS Ankyrin repeat signature 629 644 IPR002110 GO:0005515
Cpe18g00465 941 PANTHER K+ TRANSPORTER 1-RELATED 491 938 - -
Cpe18g00465 941 PANTHER K+ TRANSPORTER 1-RELATED 93 468 - -
Cpe18g00465 941 SUPERFAMILY cAMP-binding domain-like 336 568 IPR018490 -
Cpe18g00465 941 SMART ANK_2a 661 690 IPR002110 GO:0005515
Cpe18g00465 941 SMART ANK_2a 725 754 IPR002110 GO:0005515
Cpe18g00465 941 SMART ANK_2a 628 657 IPR002110 GO:0005515
Cpe18g00465 941 SMART ANK_2a 595 624 IPR002110 GO:0005515
Cpe18g00465 941 SMART ANK_2a 692 721 IPR002110 GO:0005515
Cpe18g00465 941 ProSiteProfiles Ankyrin repeat profile. 725 757 IPR002110 GO:0005515
Cpe18g00465 941 Pfam KHA, dimerisation domain of potassium ion channel 872 934 IPR021789 -
Cpe18g00465 941 ProSiteProfiles Ankyrin repeat region circular profile. 725 756 - -
Cpe18g00465 941 Pfam Ion transport protein 95 338 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe18g00465 941 ProSiteProfiles KHA domain profile. 872 941 IPR021789 -
Cpe18g00465 941 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Cpe18g00465 941 PANTHER POTASSIUM CHANNEL AKT1 491 938 IPR045319 GO:0005249|GO:0006813
Cpe18g00465 941 PANTHER POTASSIUM CHANNEL AKT1 93 468 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00351 Cpe-Chr6:1959125 Cpe18g00465 Cpe-Chr18:5605324 0 dispersed
Cpe06g00368 Cpe-Chr6:2067318 Cpe18g00465 Cpe-Chr18:5605324 1.01E-166 dispersed
Cpe09g00766 Cpe-Chr9:7142690 Cpe18g00465 Cpe-Chr18:5605324 2.16E-18 dispersed
Cpe13g00570 Cpe-Chr13:5646196 Cpe18g00465 Cpe-Chr18:5605324 3.29E-111 dispersed
Cpe18g00465 Cpe-Chr18:5605324 Cpe20g00503 Cpe-Chr20:2920730 3.68E-07 dispersed
Cpe03g00489 Cpe-Chr3:2882204 Cpe18g00465 Cpe-Chr18:5605324 3.43E-16 transposed
Cpe07g00509 Cpe-Chr7:3340700 Cpe18g00465 Cpe-Chr18:5605324 3.81E-06 transposed
Cpe18g00465 Cpe-Chr18:5605324 Cpe04g01174 Cpe-Chr4:10007142 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00465 K21867 - csv:101220784 1494.95