Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00496 ATGAAGCGGGTATCTCGAAAAATTGGGAAGTATGAGATGGGGCGGACTGTCGGCGAAGGAACGTTTGCCAAGGTTAAGTTTGCATGTAACACGGAGACGAAGGAGGGCGTCGCCATGAAAGTTATGGCCAAAAGTAGCATTCTCAAACACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCAGACTGCATGAGGTATTGGCTAGCCAGACAAAGATATATATAATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCATAAGAAGATTCCAGAATTTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTATACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTGTCTCAACAAGGTGTTGAGCTGCTTCACACCACATGTGGAACTCCTAATTATGTTGCGCCTGAGGTGCTTCGTGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCCGGATATCTTCCTTTTTCAGAGTCAGGCCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCACCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCGAATTGAAGAAATCAGAAAAGACCCATGGTTCAGAAGAAACTACATGCCTGCTAAACTAGGAGAAGTTGAGGAAGTAAACTTAGATGATGTACGGGCTGTTTTTGATGGCATTGAGAATGAATATGTGGTTGATCAGTCAGAAAAAAGTGACGATGGTCCGTTGATGATGAATGCATTTGAGATGATAACATTATCTCAAGGGTTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTTATAATGTCTACCATTGAAGTAGTGGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGCTTCACAGTTTGCAACTGTGCTGGAGATTTATGAAGTGGCCCCGTCACTTTTTATGGTGGACGTTCGCAAGGCTGCAGGAGACACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAATATAATCTGGAAACCATCAGAGAGCGTAGGGAACTGA 1314 42.47 MKRVSRKIGKYEMGRTVGEGTFAKVKFACNTETKEGVAMKVMAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASQTKIYIILEFVSGGELYDKIVLHKKIPEFESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLRGQGYDGAAADIWSCGVILYVLMAGYLPFSESGLPTLNMKINAAEYSCPYWFSPGAKSLIQKILDPNPKTRIRIEEIRKDPWFRRNYMPAKLGEVEEVNLDDVRAVFDGIENEYVVDQSEKSDDGPLMMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSTIEVVAEAMGLNVHTRNFKTRLERRTGHRASQFATVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPSESVGN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5756549 5763342 - Cp4.1LG18g04960.1 Cpe18g00496 484957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00496 437 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00496 437 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cpe18g00496 437 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Cpe18g00496 437 SUPERFAMILY Protein kinase-like (PK-like) 8 316 IPR011009 -
Cpe18g00496 437 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 433 - -
Cpe18g00496 437 PANTHER - 4 433 - -
Cpe18g00496 437 Pfam NAF domain 307 366 IPR004041 GO:0007165
Cpe18g00496 437 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Cpe18g00496 437 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00496 437 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00496 437 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Cpe18g00496 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cpe18g00496 437 CDD CIPK_C 311 426 - -
Cpe18g00496 437 Gene3D Kinase associated domain 1, KA1 304 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00152 Cpe-Chr7:866278 Cpe18g00496 Cpe-Chr18:5756549 0 dispersed
Cpe10g00071 Cpe-Chr10:526181 Cpe18g00496 Cpe-Chr18:5756549 2.85E-177 dispersed
Cpe18g00496 Cpe-Chr18:5756549 Cpe04g01247 Cpe-Chr4:10411161 2.33E-138 dispersed
Cpe18g00496 Cpe-Chr18:5756549 Cpe20g00539 Cpe-Chr20:3136138 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62987 PF00069 Pkinase 2.90E-72 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00496 - - csv:101203676 815.068