Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00498 ATGGCCAGCTGCCTCGATATTGCAACTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTTCCGAATTACAACTTATACAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCTTCATCATCATCGAAATGTAATAACAACAAGATGGAAATCCGAGCGAACACAACAATGGCAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACGGTTTGGAGCGTTTGATGTGA 495 43.84 MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNGLERLM 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5778295 5780743 - Cp4.1LG18g04950.1 Cpe18g00498 484959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00498 164 SUPERFAMILY HMG-box 112 155 IPR036910 -
Cpe18g00498 164 PANTHER PROTEIN YABBY 6-RELATED 1 158 IPR006780 GO:0007275
Cpe18g00498 164 CDD HMG-box 123 150 - -
Cpe18g00498 164 PANTHER AXIAL REGULATOR YABBY 5 1 158 - -
Cpe18g00498 164 Gene3D High mobility group box domain 106 158 IPR036910 -
Cpe18g00498 164 Pfam YABBY protein 8 158 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00498 K25796 YAB; plant-specific transcription factor YABBY family protein - cmos:111461521 310.071
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00219 Cpe-Chr13:1656187 Cpe18g00498 Cpe-Chr18:5778295 9.28E-33 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe18g00498 Cpe-Chr18:5778295 2.97E-73 wgd
Cpe18g00498 Cpe-Chr18:5778295 Cpe04g01191 Cpe-Chr4:10087072 2.76E-82 wgd
Cpe18g00498 Cpe-Chr18:5778295 Cpe07g01105 Cpe-Chr7:9727251 2.21E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00237 . 209 369 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.6e-43 172.9
Cpe13g00219 CST 57 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 5.3e-42 167.9
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 6.7e-54 207.6
Cpe08g00754 CST 14 183 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.7e-37 150.6
Cpe13g00219 CST 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 5.1e-50 194.9
Cpe05g00237 . 182 368 C2C2-YABBY Transcription Factor Family AT4G00180 57.7 6.7e-50 194.5
Cpe01g01541 . 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.6 1.2e-37 154.1
Cpe11g01064 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.0e-61 233.4
Cpe07g01105 . 12 172 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.7e-56 216.1
Cpe18g00498 . 7 158 C2C2-YABBY Transcription Factor Family AT2G26580 68.4 1.6e-51 199.5
Cpe04g01191 . 7 156 C2C2-YABBY Transcription Factor Family AT2G26580 60.7 3.7e-48 188.3
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 6.4e-48 187.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50888 PF04690 YABBY 1.70E-61 CL0114 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe18g00498 Cpe_Chr18 FPKM 0.805907 0.598239 0.260099 0.603517 0.842528 0.685466 0.270781 0.532531 0.489162 0.640499