Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00498 ATGGCCAGCTGCCTCGATATTGCAACTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTTCCGAATTACAACTTATACAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCTTCATCATCATCGAAATGTAATAACAACAAGATGGAAATCCGAGCGAACACAACAATGGCAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACGGTTTGGAGCGTTTGATGTGA 495 43.84 MASCLDIATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSKCNNNKMEIRANTTMATEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNGLERLM 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5778295 5780743 - Cp4.1LG18g04950.1 Cpe18g00498 484959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00498 164 SUPERFAMILY HMG-box 112 155 IPR036910 -
Cpe18g00498 164 PANTHER PROTEIN YABBY 6-RELATED 1 158 IPR006780 GO:0007275
Cpe18g00498 164 CDD HMG-box 123 150 - -
Cpe18g00498 164 PANTHER AXIAL REGULATOR YABBY 5 1 158 - -
Cpe18g00498 164 Gene3D High mobility group box domain 106 158 IPR036910 -
Cpe18g00498 164 Pfam YABBY protein 8 158 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00219 Cpe-Chr13:1656187 Cpe18g00498 Cpe-Chr18:5778295 9.28E-33 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe18g00498 Cpe-Chr18:5778295 2.97E-73 wgd
Cpe18g00498 Cpe-Chr18:5778295 Cpe04g01191 Cpe-Chr4:10087072 2.76E-82 wgd
Cpe18g00498 Cpe-Chr18:5778295 Cpe07g01105 Cpe-Chr7:9727251 2.21E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50888 PF04690 YABBY 1.70E-61 CL0114 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00498 K25796 - cmos:111461521 310.071