Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe18g00547 | ATGGGTGATATTTCGTTGGAAGATGTCAAGAATGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGAGAAACTAAAGTGCACTAAAGATGGATTGAGCACAGCAGAAGGAGAAAAGAGACTCCAAATTTTTGGTCCTAACAAGCTTGAAGAGAAAAAAGAGAGCAAGGTTTTGAAGTTCTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAATCTGCGGCAATCATGGCCATTGCCCTGGCTAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTTGGGATTATTGTGTTGTTGATCATTAACTCTACCATTAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGAGATATTATCCCGGCCGATGCACGTCTCTTAGAAGGCGATCCTCTGAAGATCGACCAGTCTGCTCTTACGGGTGAATCTTTGCCTGTCACCAAGAATCCTGGTGATGGAGTGTTCTCTGGCTCCACCTGCAAGCAAGGAGAGATCGAGGCCGTTGTTATTGCCACTGGAGTGCATACCTTTTTCGGAAAGGCAGCTCATCTTGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACCGCCATTGGAAACTTCTGTATATGCTCGATCGCGGTCGGGATGGTCATTGAGATTCTAGTAATGTTTGCTATCCAGCACAGAGCATACAGAGAGGGCATTGACAACTTGTTGGTGCTTCTCATTGGAGGCATTCCCATTGCCATGCCAACAGTTCTTTCAGTAACCATGGCCATCGGATCGCATCGCCTTTCGCAGCAAGTGACAAGACAGGAACTCTCACCCTGA | 858 | 46.5 | MGDISLEDVKNENVDLERIPVEEVFEKLKCTKDGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIALANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMFAIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQVTRQELSP | 285 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 6045900 | 6047950 | - | Cp4.1LG18g05550.1 | Cpe18g00547 | 485008 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe18g00547 | 285 | Gene3D | - | 66 | 129 | - | - | |
| Cpe18g00547 | 285 | Gene3D | - | 185 | 277 | - | - | |
| Cpe18g00547 | 285 | Gene3D | - | 130 | 184 | - | - | |
| Cpe18g00547 | 285 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 14 | 277 | IPR023298 | - | |
| Cpe18g00547 | 285 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 129 | - | - | |
| Cpe18g00547 | 285 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 129 | 278 | - | - | |
| Cpe18g00547 | 285 | SUPERFAMILY | Calcium ATPase, transduction domain A | 126 | 197 | IPR008250 | - | |
| Cpe18g00547 | 285 | Pfam | E1-E2 ATPase | 126 | 276 | - | - | |
| Cpe18g00547 | 285 | Pfam | Cation transporter/ATPase, N-terminus | 19 | 81 | IPR004014 | - | |
| Cpe18g00547 | 285 | PANTHER | PLASMA MEMBRANE ATPASE | 1 | 129 | - | - | |
| Cpe18g00547 | 285 | PANTHER | PLASMA MEMBRANE ATPASE | 129 | 278 | - | - | |
| Cpe18g00547 | 285 | SMART | Cation_ATPase_N_a_2 | 15 | 87 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe18g00547 | Cpe-Chr18:6045900 | Cpe18g00807 | Cpe-Chr18:7531941 | 1.43E-152 | dispersed | |
| Cpe18g00547 | Cpe-Chr18:6045900 | Cpe18g00548 | Cpe-Chr18:6048594 | 0 | tandem | |
| Cpe18g00547 | Cpe-Chr18:6045900 | Cpe02g01627 | Cpe-Chr2:13611946 | 3.40E-159 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe18g00547 | K01535 | - | csv:101214655 | 488.419 |