Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00548 GATCATGAACAGAATGCTACATGCTCATCTGCCACATCCGCCAACCTGTTACTGGAACAGCCCGTAGGGTCTGGGAAGCCACAGAAGGTATACTCATTTAGCAACCCACAGCCGATCATGGGGTTTCTTGAATCAACTCCCTCGCCTTCTCCATTTCCTATAAGAAGAGCCTGCCGGAGAAAGAAGGGATATTCCAAGTCTATGGGTGATATTTCGCTGGAAGATGTCAAGAATGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGAGAAACTAAAGTGCACTAAAGAAGGATTGAGCACAGCAGAAGGAGAAAAGAGACTCCAAATTTTTGGTCCTAACAAGCTTGAAGAGAAAAAAGAGAGCAAGGTTTTGAAGTTCTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAATCTGCGGCAATCATGGCCATTGCTCTGGCTAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTTGGGATTATTGTGTTGTTGATCATTAACTCTACCATTAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGAGGAGGCAGCAATTCTGGTTCCAGGGGATGTGATTAGCGTTAAATTAGGAGATATTATCCCGGCCGATGCACGTCTCTTAGAAGGCGATCCTCTGAAGATCGACCAGTCTGCTCTTACCGGTGAATCTTTGCCTGTCACCAAGAATCCTGGTGATGGAGTGTTCTCTGGCTCCACCTGCAAGCAAGGAGAGATCGAGGCCGTTGTTATTGCCACTGGAGTGCATACCTTTTTTGGAAAGGCAGCTCACCTTGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACCGCCATTGGAAACTTCTGTATATGCTCGATCGCGGTCGGGATGGTCATTGAGATTCTAGTAATGTTTGCCATCCAGCACAGAGCATACAGGGAGGGCATTGACAACTTGTTGGTGCTTCTCATTGGAGGCATTCCCATAGCAATGCCAACAGTTCTTTCAGTAACCATGGCCATCGGATCGCATCGCCTTTCGCAGCAAGGTGCCATCACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGGATGGATGTCCTGTGCAGTGACAAGACAGGAACTCTCACCCTGAACAAGCTCACAGTAGACAAGTCCCTGATTGAGGAACGGATTCCTGTGGAGGAAGTTTTTGAGAAACTAAAGTGCACTAAAGAAGGATTGAGCACAGCAGAAGGAGAAAAGAGACTCCAAATTTTTGCTATGGGCGATATTTCGTTGGAAGATGTCAAGAATGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGAGAAACTAAAGTGCACTAAAGATGGATTGAGCACAGCAGAAGGAGAAAAGAGACTCCAAATTTTTGGTCCTAACAAGCTTGAAGAGAAAAAAGAGAGCAAGGTTTTGAAGTTCTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAATCTGCGGCAATCATGGCCATTGCTCTGGCTAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTTGGGATTATTGTGTTGTTGATCATTAACTCTACCATTAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGAGATATTATCCCGGCCGATGCACGTCTCTTAGAAGGCGATCCTCTGAAGATTGACCAGTCTGCTCTTACGGGTGAATCTTTGCCTGTCACCAAGAATCCTGGTGATGGAGTGTTCTCTGGCTCCACCTGCAAGCAAGGTGAGATTGAGGCCGTTGTTATTGCCACTGGAGTGCATACCTTTTTCGGAAAGGCAGCTCACCTTGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACGGCCATTGGAAACTTCTGTATATGCTCGATCGCGGTCGGGATGGTCATTGAGATTCTAGTAATGTTTGCTATCCAGCACAGAGCATACAGAGAGGGCATTGACAACTTGTTGGTGCTTCTCATTGGAGGCATTCCCATAGCAATGCCAACCGTTCTTTCAGTAACCATGGCCATCGGATCGCATCGTCTTTCGCAGCAAGGTGCCATCACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGGATGGATGTCCTGTGCAGTGACAAGACAGGAACTCTCACCCTGAACAAGCTCACAGTAGACAAGTCCCTGATTGAGTCCACGAAACCCCAATTCTCCTTCTGCTTCTGCCCTAAACACTTTCCGTTTCCCATGGCCTCTCAAGCTCTCACTGAGTACGAGCGCAAGAGGCTCGAGAACATTCGCCGCAACGATGAAATGATGGCCGCCCTCAAGCTTCAGTCCAAAGCCTCTGAACTCTCTGCTGCCTCCAAGCAGTTGAAACCAAATGGGAAAGGGTTTATCCGAAGACCAAACCTAAAAATCGATACTACCATAGTTTTACGGCGCTCTTTGCGTGCTAGAGGAATTCTCCCTGATGCCAAAAGTGTTTCAGATGATATTACGAAGCCGGCTACTAAAATTAAATCGATAGGATAG 2589 46.93 DHEQNATCSSATSANLLLEQPVGSGKPQKVYSFSNPQPIMGFLESTPSPSPFPIRRACRRKKGYSKSMGDISLEDVKNENVDLERIPVEEVFEKLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIALANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMFAIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEERIPVEEVFEKLKCTKEGLSTAEGEKRLQIFAMGDISLEDVKNENVDLERIPVEEVFEKLKCTKDGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIALANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMFAIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIESTKPQFSFCFCPKHFPFPMASQALTEYERKRLENIRRNDEMMAALKLQSKASELSAASKQLKPNGKGFIRRPNLKIDTTIVLRRSLRARGILPDAKSVSDDITKPATKIKSIG 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6048594 6069055 - Cp4.1LG18g05540.1 Cpe18g00548 485009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00548 862 SMART Cation_ATPase_N_a_2 82 154 IPR004014 -
Cpe18g00548 862 SMART Cation_ATPase_N_a_2 447 519 IPR004014 -
Cpe18g00548 862 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 557 752 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe18g00548 862 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 197 410 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe18g00548 862 PANTHER CALCIUM-TRANSPORTING ATPASE 68 400 - -
Cpe18g00548 862 Pfam E1-E2 ATPase 198 359 - -
Cpe18g00548 862 Pfam E1-E2 ATPase 558 708 - -
Cpe18g00548 862 PANTHER PLASMA MEMBRANE ATPASE 401 432 - -
Cpe18g00548 862 PANTHER PLASMA MEMBRANE ATPASE 68 400 - -
Cpe18g00548 862 PANTHER PLASMA MEMBRANE ATPASE 561 750 - -
Cpe18g00548 862 PANTHER PLASMA MEMBRANE ATPASE 433 561 - -
Cpe18g00548 862 SUPERFAMILY Calcium ATPase, transduction domain A 200 280 IPR008250 -
Cpe18g00548 862 PRINTS P-type cation-transporting ATPase superfamily signature 594 613 - -
Cpe18g00548 862 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Cpe18g00548 862 PRINTS P-type cation-transporting ATPase superfamily signature 230 244 - -
Cpe18g00548 862 Gene3D - 498 560 - -
Cpe18g00548 862 Gene3D - 241 384 - -
Cpe18g00548 862 Gene3D - 133 213 - -
Cpe18g00548 862 PANTHER CALCIUM-TRANSPORTING ATPASE 401 432 - -
Cpe18g00548 862 PANTHER CALCIUM-TRANSPORTING ATPASE 561 750 - -
Cpe18g00548 862 PANTHER CALCIUM-TRANSPORTING ATPASE 433 561 - -
Cpe18g00548 862 Gene3D - 631 725 - -
Cpe18g00548 862 Gene3D - 726 738 IPR023214 -
Cpe18g00548 862 SUPERFAMILY Calcium ATPase, transmembrane domain M 446 724 IPR023298 -
Cpe18g00548 862 Gene3D - 561 630 - -
Cpe18g00548 862 Pfam Cation transporter/ATPase, N-terminus 451 513 IPR004014 -
Cpe18g00548 862 Pfam Cation transporter/ATPase, N-terminus 86 148 IPR004014 -
Cpe18g00548 862 ProSitePatterns E1-E2 ATPases phosphorylation site. 731 737 IPR018303 -
Cpe18g00548 862 SUPERFAMILY Calcium ATPase, transduction domain A 558 629 IPR008250 -
Cpe18g00548 862 Gene3D - 739 750 IPR023299 GO:0000166
Cpe18g00548 862 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Cpe18g00548 862 SUPERFAMILY Calcium ATPase, transmembrane domain M 81 375 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02378 Cpe-Chr1:19893753 Cpe18g00548 Cpe-Chr18:6048594 2.67E-94 dispersed
Cpe02g01627 Cpe-Chr2:13611946 Cpe18g00548 Cpe-Chr18:6048594 0 dispersed
Cpe03g01159 Cpe-Chr3:9511861 Cpe18g00548 Cpe-Chr18:6048594 3.07E-132 dispersed
Cpe04g01319 Cpe-Chr4:10842080 Cpe18g00548 Cpe-Chr18:6048594 2.36E-145 dispersed
Cpe04g01518 Cpe-Chr4:11954464 Cpe18g00548 Cpe-Chr18:6048594 2.65E-180 dispersed
Cpe07g00741 Cpe-Chr7:6414722 Cpe18g00548 Cpe-Chr18:6048594 6.78E-174 dispersed
Cpe11g00633 Cpe-Chr11:4054155 Cpe18g00548 Cpe-Chr18:6048594 8.86E-175 dispersed
Cpe18g00548 Cpe-Chr18:6048594 Cpe18g00807 Cpe-Chr18:7531941 5.66E-175 dispersed
Cpe18g00546 Cpe-Chr18:6037359 Cpe18g00548 Cpe-Chr18:6048594 6.71E-34 proximal
Cpe18g00547 Cpe-Chr18:6045900 Cpe18g00548 Cpe-Chr18:6048594 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00548 K01535 - csv:101214655 600.127