Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe18g00551 | ATGACCGTGGAGGGTCGTTCAGTTGATTCAGCCGGCGATGGTGGCGCCGCCGATCATTTTCCTGTTGGGATGCGGGTTCTGGCGGTGGATGATGATCCCATTTGTCTTAAAGTGCTCGAGCATCTCCTTCGGAAATGCCAATATCATGTCACCACGACGAAGAGGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAAGTGGATTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGGTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCAGATCAGATTCTAGAACAGCATCAATTGTCTTGTTCTTGACAGTAGTTGGTTTGGTTATTGACTTTTCTTCTTCCCTAGTGTTATCAGCACATAGTGATACTGAGCTTGTGATGAAGGGGATAGCGCACGGTGCGTGCGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCGAAGGCAAAAAACAAGTTCCCTAATCAAGATAACGTTGGAAATGGAGGAAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCAAAACTCAACAGGAAACGAAAGGAACAAGACGACGATGAGGATGAAGAAGGAAAAGAGAACGAGGTTGATATCGACGACCCTTCGAACCTTAAGAGGCCTAGGGTAGTATGGTCGGTTGAGTTGCACCGGAAGTTCGTTTCAGCAGTTAATCAGTTGGGTCTTGAAAAAGCCGTGCCGAAAAAAATTCTGGATCTGATGAATGTTGAAGGGCTTACTAGAGAAAATGTGGCTAGTCATTTGCAGGCATGTGGCTATAGCATCTTTTTACTTGACAGATTTATGCTTTACCTGAAAAGAATCAGCAATGTGGCATCTCAACAAGCTAACTTGGCTGCTACATTTGGGAGTAAAGAAGGCACTTACATGCGCATAGACTTTGGCTGTTCGAGTTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACAATTGTTGAGATTCTCAGCAACTTTGAACCCCAATGAGGAGTATCCCATTGATCAATTGCAAGCAATGAACTCGAGCATTTCCTCCGCCCCCTCAACGAACAGGAACATCTCGGTTGTTGGATCAGTTTCAGCTCCCTTGCTGGATTCAAGAGACCTGCAATGCCAGGCAGGGGTAGGGGTGGTTGACAGTATGCCAAAGCAGAGTTGGGAAGAGCACGAACACGATTACGCTCGATCCCCCTTAAGCCAGAGTTTCAATCAGAATAGTCTAGTTTGTGAGAGAAAGGTCGGTTTGTCTTTGATAGTCCCGTCAAATGATGCTCAACTATCCTTCCCTCAGCACAGTGTGGTTGAAAAATTGGGTCCTAACACAAAGACGAATGCGGATAGAAACTTACATGATGGATCGATTCAAGGAAGTTTCGAGTCCTTGGATGATATGATGAACGCGATGATCAAACAGGTCGAGTTTCATGGGCCATTTGGTCGTAAAATGCAGTAG | 1554 | 45.3 | MTVEGRSVDSAGDGGAADHFPVGMRVLAVDDDPICLKVLEHLLRKCQYHVTTTKRSIEALKMLRENRNKVDLVISDVNMPDMDGFKLLELVGLEMDLPVIRSDSRTASIVLFLTVVGLVIDFSSSLVLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPNQDNVGNGGSEGEQGFSSTSNADNAKLNRKRKEQDDDEDEEGKENEVDIDDPSNLKRPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQACGYSIFLLDRFMLYLKRISNVASQQANLAATFGSKEGTYMRIDFGCSSFLDPDPSNGNWQGAAQLLRFSATLNPNEEYPIDQLQAMNSSISSAPSTNRNISVVGSVSAPLLDSRDLQCQAGVGVVDSMPKQSWEEHEHDYARSPLSQSFNQNSLVCERKVGLSLIVPSNDAQLSFPQHSVVEKLGPNTKTNADRNLHDGSIQGSFESLDDMMNAMIKQVEFHGPFGRKMQ | 517 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 6077369 | 6080616 | + | Cp4.1LG18g05430.1 | Cpe18g00551 | 485012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe18g00551 | 517 | SMART | REC_2 | 24 | 162 | IPR001789 | GO:0000160 | |
Cpe18g00551 | 517 | ProSiteProfiles | Response regulatory domain profile. | 25 | 166 | IPR001789 | GO:0000160 | |
Cpe18g00551 | 517 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 238 | 286 | IPR006447 | GO:0003677 | |
Cpe18g00551 | 517 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 323 | 507 | - | - | |
Cpe18g00551 | 517 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 100 | - | - | |
Cpe18g00551 | 517 | SUPERFAMILY | CheY-like | 23 | 174 | IPR011006 | - | |
Cpe18g00551 | 517 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 115 | 314 | IPR045279 | GO:0009736 | |
Cpe18g00551 | 517 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 323 | 507 | IPR045279 | GO:0009736 | |
Cpe18g00551 | 517 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 100 | IPR045279 | GO:0009736 | |
Cpe18g00551 | 517 | CDD | REC_typeB_ARR-like | 26 | 166 | - | - | |
Cpe18g00551 | 517 | MobiDBLite | consensus disorder prediction | 180 | 204 | - | - | |
Cpe18g00551 | 517 | Gene3D | - | 234 | 304 | - | - | |
Cpe18g00551 | 517 | Gene3D | - | 24 | 227 | - | - | |
Cpe18g00551 | 517 | Pfam | Myb-like DNA-binding domain | 239 | 286 | IPR001005 | - | |
Cpe18g00551 | 517 | Pfam | Response regulator receiver domain | 26 | 100 | IPR001789 | GO:0000160 | |
Cpe18g00551 | 517 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 115 | 314 | - | - | |
Cpe18g00551 | 517 | PIRSF | RR_ARR_type-B | 1 | 111 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cpe18g00551 | 517 | PIRSF | RR_ARR_type-B | 112 | 510 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cpe18g00551 | 517 | SUPERFAMILY | Homeodomain-like | 235 | 287 | IPR009057 | - | |
Cpe18g00551 | 517 | MobiDBLite | consensus disorder prediction | 173 | 231 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01239 | Cpe18g00551 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00300 | Cpe-Chr12:1997163 | Cpe18g00551 | Cpe-Chr18:6077369 | 8.22E-85 | dispersed | |
Cpe17g00047 | Cpe-Chr17:301283 | Cpe18g00551 | Cpe-Chr18:6077369 | 4.30E-86 | dispersed | |
Cpe18g00551 | Cpe-Chr18:6077369 | Cpe02g00336 | Cpe-Chr2:1805259 | 1.95E-14 | wgd | |
Cpe18g00551 | Cpe-Chr18:6077369 | Cpe04g01239 | Cpe-Chr4:10362146 | 7.30E-66 | wgd | |
Cpe18g00551 | Cpe-Chr18:6077369 | Cpe06g00305 | Cpe-Chr6:1686684 | 3.65E-115 | wgd | |
Cpe18g00551 | Cpe-Chr18:6077369 | Cpe07g01132 | Cpe-Chr7:9932833 | 1.85E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50890 | PF00072 | Response_reg | 1.40E-13 | CL0304 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe18g00551 | K14491 | - | cmos:111429974 | 521.931 |