Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00551 ATGACCGTGGAGGGTCGTTCAGTTGATTCAGCCGGCGATGGTGGCGCCGCCGATCATTTTCCTGTTGGGATGCGGGTTCTGGCGGTGGATGATGATCCCATTTGTCTTAAAGTGCTCGAGCATCTCCTTCGGAAATGCCAATATCATGTCACCACGACGAAGAGGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAAGTGGATTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGGTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCAGATCAGATTCTAGAACAGCATCAATTGTCTTGTTCTTGACAGTAGTTGGTTTGGTTATTGACTTTTCTTCTTCCCTAGTGTTATCAGCACATAGTGATACTGAGCTTGTGATGAAGGGGATAGCGCACGGTGCGTGCGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCGAAGGCAAAAAACAAGTTCCCTAATCAAGATAACGTTGGAAATGGAGGAAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCAAAACTCAACAGGAAACGAAAGGAACAAGACGACGATGAGGATGAAGAAGGAAAAGAGAACGAGGTTGATATCGACGACCCTTCGAACCTTAAGAGGCCTAGGGTAGTATGGTCGGTTGAGTTGCACCGGAAGTTCGTTTCAGCAGTTAATCAGTTGGGTCTTGAAAAAGCCGTGCCGAAAAAAATTCTGGATCTGATGAATGTTGAAGGGCTTACTAGAGAAAATGTGGCTAGTCATTTGCAGGCATGTGGCTATAGCATCTTTTTACTTGACAGATTTATGCTTTACCTGAAAAGAATCAGCAATGTGGCATCTCAACAAGCTAACTTGGCTGCTACATTTGGGAGTAAAGAAGGCACTTACATGCGCATAGACTTTGGCTGTTCGAGTTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACAATTGTTGAGATTCTCAGCAACTTTGAACCCCAATGAGGAGTATCCCATTGATCAATTGCAAGCAATGAACTCGAGCATTTCCTCCGCCCCCTCAACGAACAGGAACATCTCGGTTGTTGGATCAGTTTCAGCTCCCTTGCTGGATTCAAGAGACCTGCAATGCCAGGCAGGGGTAGGGGTGGTTGACAGTATGCCAAAGCAGAGTTGGGAAGAGCACGAACACGATTACGCTCGATCCCCCTTAAGCCAGAGTTTCAATCAGAATAGTCTAGTTTGTGAGAGAAAGGTCGGTTTGTCTTTGATAGTCCCGTCAAATGATGCTCAACTATCCTTCCCTCAGCACAGTGTGGTTGAAAAATTGGGTCCTAACACAAAGACGAATGCGGATAGAAACTTACATGATGGATCGATTCAAGGAAGTTTCGAGTCCTTGGATGATATGATGAACGCGATGATCAAACAGGTCGAGTTTCATGGGCCATTTGGTCGTAAAATGCAGTAG 1554 45.3 MTVEGRSVDSAGDGGAADHFPVGMRVLAVDDDPICLKVLEHLLRKCQYHVTTTKRSIEALKMLRENRNKVDLVISDVNMPDMDGFKLLELVGLEMDLPVIRSDSRTASIVLFLTVVGLVIDFSSSLVLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPNQDNVGNGGSEGEQGFSSTSNADNAKLNRKRKEQDDDEDEEGKENEVDIDDPSNLKRPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQACGYSIFLLDRFMLYLKRISNVASQQANLAATFGSKEGTYMRIDFGCSSFLDPDPSNGNWQGAAQLLRFSATLNPNEEYPIDQLQAMNSSISSAPSTNRNISVVGSVSAPLLDSRDLQCQAGVGVVDSMPKQSWEEHEHDYARSPLSQSFNQNSLVCERKVGLSLIVPSNDAQLSFPQHSVVEKLGPNTKTNADRNLHDGSIQGSFESLDDMMNAMIKQVEFHGPFGRKMQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6077369 6080616 + Cp4.1LG18g05430.1 Cpe18g00551 485012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00551 517 SMART REC_2 24 162 IPR001789 GO:0000160
Cpe18g00551 517 ProSiteProfiles Response regulatory domain profile. 25 166 IPR001789 GO:0000160
Cpe18g00551 517 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 238 286 IPR006447 GO:0003677
Cpe18g00551 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR 323 507 - -
Cpe18g00551 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 100 - -
Cpe18g00551 517 SUPERFAMILY CheY-like 23 174 IPR011006 -
Cpe18g00551 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR 115 314 IPR045279 GO:0009736
Cpe18g00551 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR 323 507 IPR045279 GO:0009736
Cpe18g00551 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 100 IPR045279 GO:0009736
Cpe18g00551 517 CDD REC_typeB_ARR-like 26 166 - -
Cpe18g00551 517 MobiDBLite consensus disorder prediction 180 204 - -
Cpe18g00551 517 Gene3D - 234 304 - -
Cpe18g00551 517 Gene3D - 24 227 - -
Cpe18g00551 517 Pfam Myb-like DNA-binding domain 239 286 IPR001005 -
Cpe18g00551 517 Pfam Response regulator receiver domain 26 100 IPR001789 GO:0000160
Cpe18g00551 517 PANTHER TWO-COMPONENT RESPONSE REGULATOR 115 314 - -
Cpe18g00551 517 PIRSF RR_ARR_type-B 1 111 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe18g00551 517 PIRSF RR_ARR_type-B 112 510 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cpe18g00551 517 SUPERFAMILY Homeodomain-like 235 287 IPR009057 -
Cpe18g00551 517 MobiDBLite consensus disorder prediction 173 231 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01239 Cpe18g00551 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00300 Cpe-Chr12:1997163 Cpe18g00551 Cpe-Chr18:6077369 8.22E-85 dispersed
Cpe17g00047 Cpe-Chr17:301283 Cpe18g00551 Cpe-Chr18:6077369 4.30E-86 dispersed
Cpe18g00551 Cpe-Chr18:6077369 Cpe02g00336 Cpe-Chr2:1805259 1.95E-14 wgd
Cpe18g00551 Cpe-Chr18:6077369 Cpe04g01239 Cpe-Chr4:10362146 7.30E-66 wgd
Cpe18g00551 Cpe-Chr18:6077369 Cpe06g00305 Cpe-Chr6:1686684 3.65E-115 wgd
Cpe18g00551 Cpe-Chr18:6077369 Cpe07g01132 Cpe-Chr7:9932833 1.85E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50890 PF00072 Response_reg 1.40E-13 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00551 K14491 - cmos:111429974 521.931