Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00556 ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTCAACTCTCTCTTAAACCACTCCCAAATCTCTCTCCAGGACCTCCACGCCGACGCAACCCACCATTTGAATCCCCCACCGCCGCAGATCCCGGCGTCTCAGCTCCACCATTTTGATCCCGCCGCTGCCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAACACAATCCCCTCCTGTTCCTGGCCCGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAGCCGTCAAGAGATATCTCCGACGACCACCACCAGAGCCACATCACTGCTACATCTCCGGCTGCCAAGGCCGCCGTCATGCTCCAGCAACAGCTTCTCTTGAACAGAGGAATCTCCGTCTCCACTGGAAATGGCGTCGCCGACCACGGTCTCCCACCTATGCCTCTCTCCCTCGGAAATGCCGACTTAGACCGCTCCCAAAACGACGTCGTCGAGGGATCCTGCTTCCGCACACCGAACTCGGGAGGTTCTATTCAATCGCATAGCTTCGGAGCTCCAGGGAACGGGATGAGTCAAACTCCGGCCGGCGGTTCCGTCGGAGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACAGACCCACACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCACTGCAAGAACTCGTTCCCAACGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGAGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTGTCATCTGAGGGAGGTGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGGTGGTGGTCGGAATTCGAACAATGGCGTGGGTGGTGGAAACCAAACGGCGTCGTCGAATGATAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATCTGCAGGGGAAAGGGTTGTGTCTTATGCCGATCTCTCTGGCGACGGCGATTTCGACATCCACGTGTCACACTAGGAATCCAATGATGAACGGCGGTGGTCAGCATCCGGTGATGGGGACGAATGGAGAAGGGCCGACGTCGCCAAGCATGTCAGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTTAAGGATGCCGCCTCCGTATCGAAGCCGTGA 1263 56.37 MQPCSREMQTFNSLLNHSQISLQDLHADATHHLNPPPPQIPASQLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDHHQSHITATSPAAKAAVMLQQQLLLNRGISVSTGNGVADHGLPPMPLSLGNADLDRSQNDVVEGSCFRTPNSGGSIQSHSFGAPGNGMSQTPAGGSVGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGGRNSNNGVGGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHTRNPMMNGGGQHPVMGTNGEGPTSPSMSVLTVQSTSMGNGSVKDAASVSKP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6104913 6107580 + Cp4.1LG18g05570.1 Cpe18g00556 485017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00556 420 MobiDBLite consensus disorder prediction 167 208 - -
Cpe18g00556 420 PANTHER TRANSCRIPTION FACTOR BHLH69 47 376 - -
Cpe18g00556 420 MobiDBLite consensus disorder prediction 293 326 - -
Cpe18g00556 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 376 - -
Cpe18g00556 420 MobiDBLite consensus disorder prediction 376 399 - -
Cpe18g00556 420 MobiDBLite consensus disorder prediction 167 216 - -
Cpe18g00556 420 Gene3D - 208 270 IPR036638 GO:0046983
Cpe18g00556 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Cpe18g00556 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 273 IPR036638 GO:0046983
Cpe18g00556 420 MobiDBLite consensus disorder prediction 301 326 - -
Cpe18g00556 420 Pfam Helix-loop-helix DNA-binding domain 218 263 IPR011598 GO:0046983
Cpe18g00556 420 SMART finulus 219 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g01154 Cpe-Chr7:10099747 Cpe18g00556 Cpe-Chr18:6104913 6.51E-78 dispersed
Cpe15g00442 Cpe-Chr15:5543153 Cpe18g00556 Cpe-Chr18:6104913 9.95E-12 dispersed
Cpe17g00673 Cpe-Chr17:5414717 Cpe18g00556 Cpe-Chr18:6104913 8.45E-10 dispersed
Cpe18g00157 Cpe-Chr18:3200521 Cpe18g00556 Cpe-Chr18:6104913 8.92E-17 dispersed
Cpe18g00556 Cpe-Chr18:6104913 Cpe02g00239 Cpe-Chr2:1229324 1.38E-22 dispersed
Cpe04g00027 Cpe-Chr4:244529 Cpe18g00556 Cpe-Chr18:6104913 1.31E-62 transposed
Cpe12g01053 Cpe-Chr12:8773170 Cpe18g00556 Cpe-Chr18:6104913 4.64E-59 transposed
Cpe11g01019 Cpe-Chr11:8583989 Cpe18g00556 Cpe-Chr18:6104913 1.82E-99 wgd
Cpe18g00556 Cpe-Chr18:6104913 Cpe04g01244 Cpe-Chr4:10387802 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50891 PF00010 HLH 1.60E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00556 - - csv:101211609 741.495