Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00559 ATGGTGGCAGCCATGACGTCAGAACGGCAAATAGCAGAATCTACCGCCACGATTCTGACACCTGCTCACCATCAAGATCTAATAATGACCGTCCGATCATTTCTTTGGTATCAGGTCCTTGAAAACCCTAGAAGGGAGATTTCAGTGGGAGAGAGTTTGCAGAGAAGACGCCCTCTTAGGGAATGCAGAGAGATGAGAGGAGCGCTGTTGACGAGTTTCATCTCTAATGGTCGAGCAGGCAAGTGCATCCGCGGCCGGAATTGTCACCGGAAACACACTGGGACGAACATGGCGATGAAGGTTGTTGGGAAGGAGAAGGTCATAAAAGTCGGTATGATGGAGCAGATCAAGAGAGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGGGAACTGTTTTCCAAAATTGCTAGAGGTCGATTGAGAGAGGATGTGGCTAGAGTTTACTTTCAGCAGCTGATTTCTGCGATCGATTTCTGCCACAGTCGGGGGGTTTACCATCGCGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAACCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCAGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGTACGCCAGCGTACGTTGCGCCGGAGGTTATCGGGAAGAACGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCAGGATTTCTCCCATTTCAGGACGACAATATTATGGCCATGTACAGGAAGATTTACAAGGGAGACTTCAAATGCCCGCCGTGGTTCTCATCGGATGCCCGTCGACTAATCACCAAACTCCTCGATCCAAATCCGAATACCAGAATTACAACTTCGAAGATCATGGAGTCGTCCTGGTTCAGGAAATCTGTACCAAGAACTGTGACAACGAAAGAGGAGCAGGAATTCGACGAGAGCAACGAGAAACTAAAGCAATCTGAGACTCTGAATGCATTCCACATAATTTCGTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAAAAAGAGGAGCTGCGATTTGCGACGACGAGGCCGGCAAGCAGTGTGATATCGAAGCTGGAGGAGGTCGCGAAAGCGGGGAAATTCAACGTCAAAAAGAGCGAATCGAGAGTCAGACTACAGGGCCAGGAGTGCGGAAGAAAAGGGAAACTGGCGGTGGCTGCGGAGATCTTCGCCTTGACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAGGATCATGGCGACACCCTCGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCACTCAAAGACATTGTCTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1455 49.76 MVAAMTSERQIAESTATILTPAHHQDLIMTVRSFLWYQVLENPRREISVGESLQRRRPLRECREMRGALLTSFISNGRAGKCIRGRNCHRKHTGTNMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIARGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKNGYNGAKADLWSCGVILYVLLAGFLPFQDDNIMAMYRKIYKGDFKCPPWFSSDARRLITKLLDPNPNTRITTSKIMESSWFRKSVPRTVTTKEEQEFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFNVKKSESRVRLQGQECGRKGKLAVAAEIFALTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6124703 6126879 - Cp4.1LG18g05660.1 Cpe18g00559 485020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00559 484 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 76 482 - -
Cpe18g00559 484 SUPERFAMILY Protein kinase-like (PK-like) 72 340 IPR011009 -
Cpe18g00559 484 Pfam Protein kinase domain 76 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00559 484 SMART serkin_6 68 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00559 484 Gene3D Kinase associated domain 1, KA1 349 475 - -
Cpe18g00559 484 Gene3D Phosphorylase Kinase; domain 1 74 155 - -
Cpe18g00559 484 ProSiteProfiles Protein kinase domain profile. 68 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe18g00559 484 Gene3D Transferase(Phosphotransferase) domain 1 156 331 - -
Cpe18g00559 484 CDD CIPK_C 355 470 - -
Cpe18g00559 484 PANTHER - 76 482 - -
Cpe18g00559 484 ProSiteProfiles NAF domain profile. 349 373 IPR018451 GO:0007165
Cpe18g00559 484 Pfam NAF domain 352 411 IPR004041 GO:0007165
Cpe18g00559 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00984 Cpe-Chr7:8907079 Cpe18g00559 Cpe-Chr18:6124703 0 dispersed
Cpe07g01155 Cpe-Chr7:10112001 Cpe18g00559 Cpe-Chr18:6124703 0 dispersed
Cpe18g00559 Cpe-Chr18:6124703 Cpe20g00467 Cpe-Chr20:2703149 2.58E-178 dispersed
Cpe11g01018 Cpe-Chr11:8572895 Cpe18g00559 Cpe-Chr18:6124703 0 wgd
Cpe18g00559 Cpe-Chr18:6124703 Cpe02g00329 Cpe-Chr2:1747908 3.01E-165 wgd
Cpe18g00559 Cpe-Chr18:6124703 Cpe04g01247 Cpe-Chr4:10411161 0 wgd
Cpe18g00559 Cpe-Chr18:6124703 Cpe06g00299 Cpe-Chr6:1642721 1.13E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62992 PF00069 Pkinase 7.60E-68 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00559 - K07198 csv:101211847 747.273