Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00562 ATGGCGTTGCTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTCGAGATCTGTGAAAGAGTTTATGTTTTTGATTGCTGTTTTACCACAGATTCGTGGAAGGAGAAGAATTATGAAGCTTACTTATGTGGAATAGTTGCTCAACTCAGAGAGCATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGATGCAAAGTCAGATGGGCGATATCTTATCGAAGTATGAAATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACAATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTCTCCCTTGGACAAAATAACGTTTTGCTAATGCACTGTGAGCGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTTTAGGAAACAATATAGTGGGGAGCAAAGAACATTGGACATGGTTTACAGGCAGGCACCGCGTGAGCTTTTACATGTTTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGATATCTTCAATACATTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATGTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTCGTCAGTGATCGAGCTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGTAAAAATGTCCGTTCCTACAAACAGGTAGAATCAGAACTGGTTAAGATTGATATTAATTGCCATATTCAAGGAGATGTTGTTCTTGAGTGCATCAGCTTGCATGACGACATGGAATCTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATCTTAATTGTCAACCGTGAAGAGATCGACACTTTATGGAACGCTAAAGATAAATTTCCAAAGGAGTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCCGGAACTTCTACTGTTCCAAATGATATACTTTGCATTGAGGAGGATGGTCTCCCCATTGAAGCATTTGCTAAAGTACAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATATGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGACAGACAATAATTCTCTTTGGAGTACACAATTTAGTTCTTTACTTCAGTGTACAAGTCCCAGAAAACTTCCGCAGAAGTTCACATTGGAGAACAAACTTTTCCTAGAGAAGGAAGAGTCTGTTCGAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACAATGAACGTGATTCAGTATTCCAACAGGTGCCTCGATCTTCAGAGGCTTTTCCACTTAACTATGACATTTTGCTAGATTCGCGGAATTCAGAGAGAAGCAATAGGACCTCACACAGTGCTTCGGTTGGAAGCCACTCATTTCTTGTTTCTGAAGGAGAAACAGAGGTTTCTCATCTCAAAACTGCATCTTCATCTTTTCCGAATGCAGCATTGGCTGTTTCTCTTGCGCCTGAATCTCTTCGCACTAAAATTTTCCTTACAGGGACAACCATGCCACCACCTCCTCATATTTCTGTTGCTAATTCTGTACCTTATCCTCCCCCTCCTCCAACTGCATCAGCACTTCCGTCTAATAACTTATCAACTCTAGGACCAGATAAATCTTCTCTCACCGAGGAAAGAAAAATCTATTCAAAGGATCAAAGTCAGTTATCAACCATTGGCCCTCCCCTGTCTGTAACCTCAGCAATTGCATCCTTAGTGCCTCAACCACCACCACCACCACCACCTCCTCTTTGTACATCCACTGTAAATCATACAATTTCATCTCCAGTTCCTTTGCCACCTCCACCTCCGCCTCCCTCTCTTCCTATGTCGTCCAAACAGGATGAAAGTACTTTAACATCTCCATTTGTTCCTCCTCCACCACCACCACCTCTTCTTATGACATCCATGCAGGTTGGAAGTACTTCAACATCTTCTTCTGTTCCACCTCCGCCCCCACCTCTTCCGTTTAGACAGGTTGAATATACTTCAACATTTCCATCTGTTCCCCCTCCTCCACCACCGCCAACTTCCACCACAGGCTCCTCTTCAGCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATCTGGTGAACTATGTTCTGATTCTCTTCTCGAAAATGGTTTGTCTAGGTGTCCTCCGCCACCAAATAGTTATCCATCAGGTATAAAGGGACGGAGTTTGTCACGCACTATAAATTCAAGATCACATATAACCAAGAAACTTAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGTTTCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCTGCTCAAGAAGTCAGGTGGGCCTGGTTCAGTTGGGAATAAACCTGAGAAAGTACAACTGGCTTCGGACTTCAGTGTAGTCGGCATCAGTATTGATCATAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATGCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTCAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTTGAATGTAAACTTCGAGTTTTCTCATTCAAGATGCAGTTCAGCTGTCAGGTCACTGACCTCAAAAAAAGCTTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAGTCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAATGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGATTTTGGCGGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAATTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTTCTTCGTTTCGCTGAAGCTGAAGTCAGAACTTTGGCTTCACTATACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGTATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAGATAGAGCTTGAATTGAAGAAAGCAACTGAAAAGGAAAAATCAAAGACGGGGCACGTGCACAAAAAGACGAGGACGAAGAAGTTATCACGCTCCCAGGTCGAGATTGGCAATGTCAAGTAA 3642 42.42 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDSWKEKNYEAYLCGIVAQLREHLADASFLVFNFRRLEMQSQMGDILSKYEMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIFRKQYSGEQRTLDMVYRQAPRELLHVLSPMNPVPSQLRYLQYIARRNVALEWPPMDRALTLDCIILRFIPNVDGEGGCRPIFRIYGQDPLLVSDRAPKVLYSTPKRSKNVRSYKQVESELVKIDINCHIQGDVVLECISLHDDMESEEMMFRAMFNTAFIRSNILIVNREEIDTLWNAKDKFPKEFRAEILFSEMDAGTSTVPNDILCIEEDGLPIEAFAKVQEIFSHVDWLDPKADVALNMLHQMNALNIAQEKTDNNSLWSTQFSSLLQCTSPRKLPQKFTLENKLFLEKEESVRTSKFSPDAAKTEQNNERDSVFQQVPRSSEAFPLNYDILLDSRNSERSNRTSHSASVGSHSFLVSEGETEVSHLKTASSSFPNAALAVSLAPESLRTKIFLTGTTMPPPPHISVANSVPYPPPPPTASALPSNNLSTLGPDKSSLTEERKIYSKDQSQLSTIGPPLSVTSAIASLVPQPPPPPPPPLCTSTVNHTISSPVPLPPPPPPPSLPMSSKQDESTLTSPFVPPPPPPPLLMTSMQVGSTSTSSSVPPPPPPLPFRQVEYTSTFPSVPPPPPPPTSTTGSSSAVPSAPPPPTLSGRGTSKSGELCSDSLLENGLSRCPPPPNSYPSGIKGRSLSRTINSRSHITKKLKPLHWLKLSKAVQGSLWAETQKTGEVSRAPEIDMSELESLFSAAVPAPDLLKKSGGPGSVGNKPEKVQLASDFSVVGISIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDAALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVECKLRVFSFKMQFSCQVTDLKKSLNFVNSAAEEIKSSVKLKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSNDLASLEPASKVQLKILAEEMQAISKGLEKIVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVSMFNRAHEENCKQIELELKKATEKEKSKTGHVHKKTRTKKLSRSQVEIGNVK 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6145810 6156150 - Cp4.1LG18g05670.1 Cpe18g00562 485023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00562 1213 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cpe18g00562 1213 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 737 752 - -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 708 736 - -
Cpe18g00562 1213 Pfam Formin Homology 2 Domain 788 1165 IPR015425 -
Cpe18g00562 1213 Gene3D Formin, FH2 domain 779 1175 IPR042201 -
Cpe18g00562 1213 Coils Coil 1165 1185 - -
Cpe18g00562 1213 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 551 568 - -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 614 628 - -
Cpe18g00562 1213 SUPERFAMILY Formin homology 2 domain (FH2 domain) 713 1181 - -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 442 463 - -
Cpe18g00562 1213 SMART PTEN_C2_2 197 337 IPR014020 -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 637 652 - -
Cpe18g00562 1213 Gene3D - 200 340 - -
Cpe18g00562 1213 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cpe18g00562 1213 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cpe18g00562 1213 PANTHER FORMIN-J 1 677 - -
Cpe18g00562 1213 PANTHER FORMIN-J 667 1198 - -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 594 613 - -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 1183 1213 - -
Cpe18g00562 1213 ProSiteProfiles Formin homology-2 (FH2) domain profile. 781 1190 IPR015425 -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 551 777 - -
Cpe18g00562 1213 SMART it6_source 781 1213 IPR015425 -
Cpe18g00562 1213 MobiDBLite consensus disorder prediction 444 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00562 Cpe-Chr18:6145810 Cpe18g00780 Cpe-Chr18:7393833 6.29E-158 dispersed
Cpe18g00562 Cpe-Chr18:6145810 Cpe02g00327 Cpe-Chr2:1729095 0 wgd
Cpe18g00562 Cpe-Chr18:6145810 Cpe04g01248 Cpe-Chr4:10415693 0 wgd
Cpe18g00562 Cpe-Chr18:6145810 Cpe06g00297 Cpe-Chr6:1626314 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00562 - - cmax:111485750 2157.87