Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00567 ATGGCGGAGCGCCAATGTTATGAAACTGACCGACTTGGAAGCTCGAAGGTTACTGCTGGGCAAGAGGACGACGAAGAAGAAATGGAAGATTCGGAGGATGAATCAGAGGTGGAGTTGGAAGATGGAGGAGCGATGAGTGAGTTGCAACCGATTGAGTCGAGGATCGATTCGTCGGTTACTGAAGCTACGGTGAGGGAGTCTCCTTCTGAAACCCTAACGGCGCCTTCTGCGAATCACTCCTCGGAGAACGGTTTGCCCGTCGATTCTGCTGCGCAGTCACTCGAAGAAGCTGAATTGAAGCAATCTCCATCTTCCTGCCATGAGCCTTTGGCTGTTGAAGCAACCCCGACAGATAAGGTGCAAGAACAAAGCCAGCTTCAGTTGTCAATATATAAAGGACCTGATCCGGAACAATCACCAACTTCTGTTACCCAGTCTATCTCATCCTCCGCAAGTCCAAGTTTATCCAAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCTTCCAACCATAAAACTGCATCATCGGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTGTGCTAAGAAGATAGAATGTTGTGATCACTCAGGCCATAGAACAGAGATTGTTTACCGAAGCCAACATAGCCACGATCCACCTAGGATGATTAGCAACCCCAAGGAAAGACAGCTTGTGCCATATGTTGAGCCTGTGGTTAAGCAAATCATCACAGAACATACCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCTAAAGAACCTTCACGGGAAACAAATTTAGTCCTTGTAAGGAAACGACAGTACTCGAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGGCGGCGAACCTGAGACAAAACAAACAGTTAAGAAAAGTAGTGCGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCGAAATTTGTGGTGCATGCAGCGGGTGACGTGGGAATCTCGGGCGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAGTCCTCATCCCAGGAACTACTACCGCTGTACCTCTGCTGGGTGTCCAGTCCGTAAGCACATCGAATCAGCAGTAGAAAATCCATATGCAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCGAAGAAACGACACAGTCCACCAAGTGCTCCTCGTGTAGCTGTTGCAGATCCAGCCTCCATGAGCAATACGCAACTGAAGAAAACAGACTTAACCGAGAACCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAATTGACTGGTGAGGCCTTGGAGCTTGGAGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATCGGATTTGAAATCAAGCCTTGCTGA 1521 46.29 MAERQCYETDRLGSSKVTAGQEDDEEEMEDSEDESEVELEDGGAMSELQPIESRIDSSVTEATVRESPSETLTAPSANHSSENGLPVDSAAQSLEEAELKQSPSSCHEPLAVEATPTDKVQEQSQLQLSIYKGPDPEQSPTSVTQSISSSASPSLSKHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGHRTEIVYRSQHSHDPPRMISNPKERQLVPYVEPVVKQIITEHTRRVINDSDPPTPSKEPSRETNLVLVRKRQYSSDSDGNDEFKIKDENGGEPETKQTVKKSSAGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGSPHPRNYYRCTSAGCPVRKHIESAVENPYAVIITYKGVHDHDMPVPKKRHSPPSAPRVAVADPASMSNTQLKKTDLTENQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6177793 6182192 + Cp4.1LG18g05560.1 Cpe18g00567 485028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00567 506 MobiDBLite consensus disorder prediction 161 175 - -
Cpe18g00567 506 MobiDBLite consensus disorder prediction 286 310 - -
Cpe18g00567 506 MobiDBLite consensus disorder prediction 1 198 - -
Cpe18g00567 506 MobiDBLite consensus disorder prediction 117 159 - -
Cpe18g00567 506 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 21 504 - -
Cpe18g00567 506 MobiDBLite consensus disorder prediction 280 354 - -
Cpe18g00567 506 SUPERFAMILY WRKY DNA-binding domain 363 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 MobiDBLite consensus disorder prediction 176 193 - -
Cpe18g00567 506 Gene3D WRKY domain 352 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 Gene3D WRKY domain 178 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 MobiDBLite consensus disorder prediction 311 332 - -
Cpe18g00567 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 504 IPR044810 GO:0003700
Cpe18g00567 506 MobiDBLite consensus disorder prediction 51 88 - -
Cpe18g00567 506 SUPERFAMILY WRKY DNA-binding domain 192 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 Pfam WRKY DNA -binding domain 369 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 Pfam WRKY DNA -binding domain 196 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 SMART WRKY_cls 367 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 SMART WRKY_cls 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe18g00567 506 MobiDBLite consensus disorder prediction 22 41 - -
Cpe18g00567 506 MobiDBLite consensus disorder prediction 426 446 - -
Cpe18g00567 506 ProSiteProfiles WRKY domain profile. 195 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00567 Cpe-Chr18:6177793 Cpe03g00029 Cpe-Chr3:148105 2.83E-18 dispersed
Cpe18g00567 Cpe-Chr18:6177793 Cpe04g01253 Cpe-Chr4:10448303 1.04E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50893 PF03106 WRKY 1.60E-23 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00567 - - bhj:120071353 756.133